CODEWITHSUNDEEP
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Juuro
Juuro

Reputation: 227

Gnuplot Script for average over multiple files

I have series of measurement in several files. Every file is looking like this:

1 151.973938 144.745789 152.21991 17:57:14
2 151.995697 144.755737 152.21991 17:57:14
3 152.015747 144.765076 152.21991 17:57:14
.
.
.

I'm looking for a possibility to compute the average of the same field in several files. At the end of the process I would like to have a graph of the average measurement.

Is that possible with gnuplot? I wasn't able to find a fitting option in gnuplot by myself. If not, which different way to achieve that would you recommend?

Best regards, Juuro

Upvotes: 4

Views: 7313

Answers (2)

andyras
andyras

Reputation: 15910

You cannot do it all in gnuplot. Gnuplot is limited to processing columns from one file at a time. You need some other utility to preprocess your data. Assuming the data is in the format you demonstrated (with spaces instead of semicolons), this script will take the average of the second, third and fourth columns and spit out a file with the first and fifth columns the same, and the middles averaged. Run this bash script in a directory where there are only the .txt files you want to process.

#!/bin/bash

sum=$(ls -l *.txt | wc -l)
paste -d" " *.txt | nawk -v s="$sum" '{
    for(i=0;i<=s-1;i++)
    {
        t1 = 2+(i*5)
        temp1 = temp1 + $t1
        t2 = 3+(i*5)
        temp2 = temp2 + $t2
        t3 = 4+(i*5)
        temp3 = temp3 + $t3
    }
    print $1" "temp1/s" "temp2/s" "temp3/s" "$5
    temp1=0
    temp2=0
    temp3=0
}'

From inside gnuplot, you can run the script like this:

!myscript.sh > output.out
plot 'output.out' u 1:2 # orwhatever

or like this:

plot '<myscript.sh' u 1:2

(code inspired by what I found here.)

Upvotes: 4

Raphael Roth
Raphael Roth

Reputation: 27373

I think it's no possible with gnuplot. I would first make a script which does the averaging and prints the results to stdout. Say this script is called average.py:

plot '<average.py FILE1 FILE2 FILE3' w l

the script average.py can look like this for example.

#!/usr/bin/python
from numpy import loadtxt,mean,ones
import sys 

#number of files:
nrfiles=len(sys.argv[1:])

#just to get the dimensions of the files
data=loadtxt(str(sys.argv[1]))
rows=data.shape[0]
cols=data.shape[1]

#initialize array
all=ones((int(nrfiles),int(rows),int(10)))

#load all files:
n=0
for file in sys.argv[1:]:
      data=loadtxt(str(file))
      all[n,:,0:cols]=data
      n=n+1

#calculate mean:
mean_all=mean(all,axis=0)

#print to stdout
for i in range(rows):
      a=''
      for j in range(cols):
         a=a+str('%010.5f   ' % mean_all[i,j])
      print str(a)

The limits of this script is that all files must have the same data-structure

Upvotes: 2

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