Reputation: 155
I have multiple data files with two columns of numbers in scientific format as shown below:
-6.000000E-2 0.000000E+0
1.060000E+0 0.000000E+0
2.510000E+0 0.000000E+0
2.700000E+0 5.000000E-2
2.735000E+0 5.000000E-2
2.755000E+0 1.000000E-1
2.775000E+0 1.500000E-1
2.785000E+0 1.500000E-1
2.790000E+0 2.000000E-1
2.805000E+0 2.500000E-1
2.810000E+0 3.500000E-1
2.815000E+0 4.000000E-1
2.820000E+0 5.000000E-1
2.825000E+0 5.500000E-1
2.835000E+0 6.000000E-1
2.835000E+0 7.000000E-1
2.840000E+0 8.000000E-1
2.840000E+0 9.000000E-1
2.850000E+0 9.500000E-1
2.850000E+0 1.050000E+0
2.855000E+0 1.200000E+0
2.860000E+0 1.300000E+0
2.865000E+0 1.400000E+0
2.870000E+0 1.450000E+0
2.870000E+0 1.600000E+0
2.875000E+0 1.650000E+0
2.880000E+0 1.800000E+0
2.880000E+0 1.900000E+0
2.885000E+0 2.000000E+0
2.885000E+0 2.150000E+0
2.890000E+0 2.200000E+0
2.895000E+0 2.300000E+0
...
The first column is the x-data, the second is the y-data. The columns are separated by a <tab>
character. The number of lines in the file varies from 300 to 400. I wrote a program to read the values from the file and calculate the gradient using the 100th and 200th point. From that gradient i need to calculate the x-intercept (which i use the 150th point). This is the source:
#include <stdio.h>
#include <stdlib.h>
float **make_array(int size);
void cleanup(float **array, FILE *filehandle);
int main(int argc, char **argv)
{
float **entry; //2D array to hold data; entry[0][i] holds the x_i while entry[1][i] holds y_i.
FILE *infile;
infile=fopen(argv[1], "r");
if(infile=NULL){
printf("Unable to open inpufile");
exit(1);
}
char c;
int i, numlines=0, ret;
//count number of lines in file
while((c=(fgetc(infile))!=EOF))
if(c=='\n')
numlines++;
printf("Number of lines: %d", numlines);
//array to store values from file
entry=make_array(numlines);
rewind(infile);
//read values into array, ensure correct number of arguments read
for(i=0; i<numlines; i++){
fscanf(infile, " %g\t%g\n", &entry[0][i], &entry[1][i]);
if(ret!=2){
printf("reading incorrect number of inputs from file.. Terminating");
cleanup(entry,infile);
exit(3);
}
}
//dump array contents to screen to check
for(i=0;i<numlines;i++)
printf("%f\t%f\n", entry[0][i], entry[1][i]);
//find gradient of the data between the 100th and 200th point
float gradient = (entry[1][200]-entry[1][100])/(entry[0][200]-entry[0][100]);
// use the 150th point (midpoint) and the gradient to calculate the x-intercept
float vt = (entry[1][150]/gradient) - entry[0][150];
printf("\n Threshold Voltage: %f\n", vt);
cleanup(entry, infile);
return 0;
}
float **make_array(int size)
{
int i;
float **entry = malloc(2*sizeof(float));
if(entry==NULL) exit(2);
entry[0] = malloc(size*sizeof(float));
if(entry[0]==NULL) exit(2);
for(i=0; i<size; i++) entry[0][i]==0.0;
entry[1] = malloc(size*sizeof(float));
if(entry[1]==NULL) exit(2);
for(i=0; i<size; i++) entry[1][i]==0.0;
return entry;
}
void cleanup(float **array, FILE *filehandle)
{ free(array[0]);
free(array[1]);
free(array);
fclose(filehandle);
}
The program compiles without errors or warning but produces a segmentation fault when executed (on Ubuntu Linux). I have been looking through this for quite sometime and still am unable to spot the problem. Any help/comments would be greatly appreciated. Thank you very much.
Upvotes: 0
Views: 682
Reputation: 2146
float **entry = malloc(2*sizeof(float));
allocates the space of two float
to store two float *
. That will work, if on your platform sizeof(float) == sizeof(float *)
is true. is it? Anyway it should be corrected.
Besides, the initialization for(i=0; i<size; i++) entry[1][i]==0.0;
does nothing but compares uninitialized memory with 0.0.
Upvotes: 1
Reputation: 183968
float **entry = malloc(2*sizeof(float));
You want to malloc(2*sizeof(float*))
there. Or better malloc(2*sizeof *entry);
.
Upvotes: 1