CODEWITHSUNDEEP
rheatmap
Matt
Matt

Reputation: 841

How to change the color key value in heatmap.2?

enter image description here

As the above screenshot showed, I used the function heatmap.2() here.

how can I change 'Value' in the color coded bar to any other name?

One can just use the data from gplots package:

 library(gplots)

 data(mtcars)

 x  <- as.matrix(mtcars)

 rc <- rainbow(nrow(x), start=0, end=.3)

 cc <- rainbow(ncol(x), start=0, end=.3)

 heatmap.2(x, key=TRUE)

Many thanks :-)

Upvotes: 5

Views: 18366

Answers (3)

Nikolay
Nikolay

Reputation: 593

Just come across same task recently. Now there is an option "key.title" to set the title for scale inlet:

library(gplots)
data(mtcars)
x  <- as.matrix(mtcars)
heatmap.2(x, key.title = "New Title", key.xlab="New value", key.ylab="New count")

enter image description here

Unfortunately, it do not propagate properly if there is no histogram in inlet:

library(gplots)
data(mtcars)
x  <- as.matrix(mtcars)
heatmap.2(x, key.title = "New Title", key.xlab="New value", key.ylab="New count")

enter image description here

Well, key.xlab working as expected and can be used instead.

I've checked the source code on github and it is already fixed there.

Upvotes: 1

milo
milo

Reputation: 447

The function heatmap.2 may have changed since @BondedDust answered, but its now possible to easily change the heatmap.2 key labels via:

key.xlab="New value"

First, your code from above (using the standard colors):

library(gplots)
data(mtcars)
x  <- as.matrix(mtcars)
heatmap.2(x,key=TRUE)

Before screenshot of key

Now replace the x and y labels:

library(gplots)
data(mtcars)
x  <- as.matrix(mtcars)
heatmap.2(x, key=TRUE , key.xlab="New value", key.ylab="New count")

After screenshot of key

Upvotes: 12

IRTFM
IRTFM

Reputation: 263332

It's hard-coded. You will need to change it in the code. It appears about midway down the section that draws the key and the line is:

else mtext(side = 1, "Value", line = 2)

This is the section of the heatmap.2 code that creates the key (at least up to the point where the word "Value" appears) :

 if (key) {
        par(mar = c(5, 4, 2, 1), cex = 0.75)
        tmpbreaks <- breaks
        if (symkey) {
            max.raw <- max(abs(c(x, breaks)), na.rm = TRUE)
            min.raw <- -max.raw
            tmpbreaks[1] <- -max(abs(x), na.rm = TRUE)
            tmpbreaks[length(tmpbreaks)] <- max(abs(x), na.rm = TRUE)
        }
        else {
            min.raw <- min(x, na.rm = TRUE)
            max.raw <- max(x, na.rm = TRUE)
        }
        z <- seq(min.raw, max.raw, length = length(col))
        image(z = matrix(z, ncol = 1), col = col, breaks = tmpbreaks, 
            xaxt = "n", yaxt = "n")
        par(usr = c(0, 1, 0, 1))
        lv <- pretty(breaks)
        xv <- scale01(as.numeric(lv), min.raw, max.raw)
        axis(1, at = xv, labels = lv)
        if (scale == "row") 
            mtext(side = 1, "Row Z-Score", line = 2)
        else if (scale == "column") 
            mtext(side = 1, "Column Z-Score", line = 2)
        else mtext(side = 1, "Value", line = 2)
 .... lots more code below

You should type heatmap.2 , then copy the source code to an editor and then use the search function to find "Value". Change "Value" to something else (in quotes) and then type heatmap.2 <- and paste in the code and hit return. (Unless you save this it will only persist as long as the session continues.)

Upvotes: 2

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