CODEWITHSUNDEEP
rbioinformaticsbioconductor
alap
alap

Reputation: 647

data.frame compact version

Data frame : 

200.01  117:10520   227137.56097561
200.01  155:24  227137.56097561
200.01  265:47  227137.56097561
200.01  266:37  227137.56097561
200.01  281:568 227137.56097561
200.01  282:246 227137.56097561
200.31  190:3374    227360
200.56  110:1261    227545.365853659
200.56  186:571 227545.365853659
200.66  114:969 227619.512195122
200.66  118:3886    227619.512195122

The data is the one presented. The question : I want to make one row from the duplicated columns. Example : 

200.01  117:10520 155:24 265:47  266:37 281:568 282:246 227137.56097561

Upvotes: 0

Views: 144

Answers (1)

A5C1D2H2I1M1N2O1R2T1
A5C1D2H2I1M1N2O1R2T1

Reputation: 193667

As mentioned in the comments, this is a pretty straightforward aggregate question:

Your data:

dat <- read.table(header = FALSE, stringsAsFactors=FALSE, text = "
                    200.01  117:10520   227137.56097561
                    200.01  155:24  227137.56097561
                    200.01  265:47  227137.56097561
                    200.01  266:37  227137.56097561
                    200.01  281:568 227137.56097561
                    200.01  282:246 227137.56097561
                    200.31  190:3374    227360
                    200.56  110:1261    227545.365853659
                    200.56  186:571 227545.365853659
                    200.66  114:969 227619.512195122
                    200.66  118:3886    227619.512195122")

Two options for aggregation. In the first one, V2 is a list. In the second option, V2 is a character string.

aggregate(V2 ~ V1 + V3, dat, c)
#       V1       V3                                                  V2
# 1 200.01 227137.6 117:10520, 155:24, 265:47, 266:37, 281:568, 282:246
# 2 200.31 227360.0                                            190:3374
# 3 200.56 227545.4                                   110:1261, 186:571
# 4 200.66 227619.5                                   114:969, 118:3886
aggregate(V2 ~ V1 + V3, dat, paste, collapse=" ")
#       V1       V3                                             V2
# 1 200.01 227137.6 117:10520 155:24 265:47 266:37 281:568 282:246
# 2 200.31 227360.0                                       190:3374
# 3 200.56 227545.4                               110:1261 186:571
# 4 200.66 227619.5                               114:969 118:3886

See also: R Grouping functions: sapply vs. lapply vs. apply. vs. tapply vs. by vs. aggregate

If multiple columns are required, you might still want to aggregate and then split the columns up later using a custom function. One example function is tableFlatten shared by @RicardoSaporta, which will create as many columns as your longest list item. But, as @Justin mentioned in the comments, a list might be more useful depending on what you're trying to do.

dat2 <-  aggregate(V2 ~ V1 + V3, dat, c)
(dat2 <- tableFlatten(dat2))
#       V1       V3     V2.01    V2.02  V2.03  V2.04   V2.05   V2.06
# 1 200.01 227137.6 117:10520   155:24 265:47 266:37 281:568 282:246
# 2 200.31 227360.0  190:3374                                       
# 3 200.56 227545.4  110:1261  186:571                              
# 4 200.66 227619.5   114:969 118:3886

Upvotes: 2

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