CODEWITHSUNDEEP
pythonbioinformatics
sam
sam

Reputation: 19194

python module for CGH analysis

I am searching for module in python for CGH analysis for bioinformatics. I find some tools but they are web based and I didnt find any module in python which deals with CGH analysis also with all graphs.
I want command line module in python.

Kindly let me know If anyone knows about the same.

thanks

Upvotes: 0

Views: 167

Answers (1)

user138032
user138032

Reputation:

I doubt you will find one. If you're doing array work and you want to drive it via the command line, learn some R and pick up one of the many packages for CGH analysis. I'm sure there are some python/R bindings out there to help you.

http://www.bioconductor.org/packages/2.12/bioc/html/CGHcall.html

http://www.bioconductor.org/packages/2.11/bioc/html/CGHnormaliter.html

http://www.hindawi.com/journals/cfg/2009/201325/

Upvotes: 3

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