CODEWITHSUNDEEP
rrcpp
Alex
Alex

Reputation: 4180

After including RcppArmadillo.h, errors occur when compiling code

I would like to use some of the functionalities included in RcppArmadillo. As I read in another post on SO, if RcppArmadillo.h is included, Rcpp.h should not be included. I did just that, but when trying to compile the .cpp file, I got some error messages. EDIT. Per Dirk's suggestion, I only included RcppArmadillo.h, which significantly reduced the number of error messages: The minimally reproducible code is below:

#include <RcppArmadillo.h>
// [[Rcpp::depends(RcppArmadillo)]]

using namespace Rcpp;
using namespace arma;

template <class RandomAccessIterator, class StrictWeakOrdering>
void sort(RandomAccessIterator first, RandomAccessIterator last, StrictWeakOrdering comp);

struct val_order{
        int order;
        double value;
};

bool compare(const val_order & a, const val_order & b){return (a.value<b.value);}

// [[Rcpp::export]]
IntegerVector order(NumericVector x){
    int n=x.size();
    std::vector<int> output(n);
    std::vector<val_order> index(n);
    for(int i=0;i<x.size();i++){
        index[i].value=x(i);
        index[i].order=i;
    }
    std::sort(index.begin(), index.end(), compare); 
    for(int i=0;i<x.size();i++){
        output[i]=index[i].order;
    }
    return wrap(output);
}

The error message is below:

Error in sourceCpp("functions.cpp") : 
  Error 1 occurred building shared library.
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3'
ld: library not found for -lgfortran
collect2: ld returned 1 exit status
make: *** [sourceCpp_44748.so] Error 1

Just to reiterate, this code has no problem compiling when I use Rcpp.h.

Upvotes: 1

Views: 642

Answers (1)

Dirk is no longer here
Dirk is no longer here

Reputation: 368509

A few things:

  1. Your post is not helpful. We do not need dozens of lines of error messages, but we do need reproducible code. Which you did not included.

  2. You include several C++ headers and several R headers. Don't.

  3. Include one header only: RcppArmadillo.h and if that fails, post a reproducible example.

Edit: Thanks for your update. Your code now compiles, your error is a linker error. You simply need to install the Fortran compiler under OS X.

Upvotes: 1

Related Questions