CODEWITHSUNDEEP
roptimizationsurvival-analysisgamma-function
noah
noah

Reputation: 11

R for optimizing a function which involves the gamma function

I am trying to optimize a function which involves a gamma function. my data is a censored data. The error, that I am having is: "Error in fn(par, ...) : attempt to apply non-function" the R code is:

logB<-function(theta, data){
#theta=(lambda, rho, tau)
#hpa = the data with first column X, second column Age, third column t,fourth column group and fifth column delta
data<-hpa
n<-length(data[,1])
t<-data[,2]
ep<-(t<=theta[3])
delta<-data[,4]
D<-sum(delta*ep)
d2<-sum(ep)
d3<-sum(delta)
w1<-sum(delta*ep*t+(1-delta)*ep*t)
w2<-sum(delta*(1-ep)*t)+ sum((1-delta)*(1-ep)*t)
d<-(d3-d1)
b<-((lgamma(d)+ lgamma(D))- d*log(w2-theta[3](n-d2))- D*log(w1+theta[3](n-d2)))
return(b)
  }
optim(c(0.4,0.9,96),logB, method="Nelder-Mead")

Error in fn(par, ...) : attempt to apply non-function

Thank you in advance for your help.

Upvotes: 1

Views: 992

Answers (1)

Hong Ooi
Hong Ooi

Reputation: 57697

In

d*log(w2-theta[3](n-d2))- D*log(w1+theta[3](n-d2))

you probably want

d*log(w2-theta[3]*(n-d2))- D*log(w1+theta[3]*(n-d2))

ie, you're missing the multiply operators.

Upvotes: 3

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