CODEWITHSUNDEEP
imageimage-processingbatch-filecmdimagej
singmotor
singmotor

Reputation: 4180

opening a raw with imagej in command prompt

I'm trying to create a .bat file to read .bsv files and turn them into color pngs. The first part of that is using imagej to open the .bsv, and then using a "save all" plugin I added. I tried making a macro but it just gives me errors. How would I, in command prompt, with image j, do:

File->import->raw->myfile.bsv and select 8-bit, width: 4000, height: 2672, offset to first image: 0, number of images: 40, gap between images: 0, little-endian byte order.

then

plugins->Save All

Thanks for any help you can offer!

Upvotes: 3

Views: 5508

Answers (1)

Jan Eglinger
Jan Eglinger

Reputation: 4090

Using the macro recorder (Plugins > Macros > Record...) in ImageJ, your described procedure produces the following code:

run("Raw...", "open=/path/to/myfile.bsv image=8-bit width=4000 height=2672 offset=0 number=40 gap=0 little-endian");
run("Save All");

If you save this macro file e.g. as mymacro.ijm, you should be able to run ImageJ with the macro option like this (depending on your platform):

-macro mymacro.ijm

Hope that helps.

Upvotes: 2

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