CODEWITHSUNDEEP
r
user2651230
user2651230

Reputation:

Use snpStats with R version 3.0.1

I am trying to use the package snpStats with R version 3.0.1. When I use the command, I get the error 

Warning message:
package ‘snpStats’ is not available (for R version 3.0.1)

However, when I look on the snpStats documentation, under details, I see this information:

Details
Package: snpStats
Version: 1.5.6
Date: 2012-03-27
Depends: R(>= 2.10.0), survival, methods, Matrix
Imports: graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests: hexbin
License: GPL-3
URL: http://www-gene.cimr.cam.ac.uk/clayton
Collate: ss.R contingency.table.R convert.R compare.R glm-test.R imputation.R indata.R long.R misc.R ld.R mvtests.R pedfile.R outdata.R plink.R qc.R qq-chisq.R single.R tdt-single.R structure.R xstuff.R zzz.R
LazyLoad: yes
biocViews: Microarray, SNP, GeneticVariability
Packaged: 2012-03-27
Built: R 2.14.1; i686-pc-linux-gnu; 2012-03-27 13:27:08 UTC; unix

Doesn't Depends: R(>= 2.10.0), survival, methods, Matrix mean that it should run on R x64 on Windows 7

Upvotes: 0

Views: 1572

Answers (1)

bdemarest
bdemarest

Reputation: 14667

Looks like you may be using install.packages()? Or trying to install an older version?

Try following the instructions on the Bioconductor site: http://bioconductor.org/packages/2.12/bioc/html/snpStats.html

source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

Upvotes: 3

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