CODEWITHSUNDEEP
rlistmatrixpermutation
user1830307
user1830307

Reputation:

How to obtain the mean-matrix from a list of matrices in R

I have a list of 100 50*50 matrices in R stored in a variable called all_permutations.

> str(all_permutations)
List of 100
 $ : num [1:50, 1:50] 0 0.00972 0.34989 0 0.0019 ...
  ..- attr(*, "dimnames")=List of 2
  .. ..$ : chr [1:50] "G1" "G2" "G3" "G4" ...
  .. ..$ : chr [1:50] "G1" "G2" "G3" "G4" ...
 $ : num [1:50, 1:50] 0 0.00972 0.34989 0 0.0019 ...
  ..- attr(*, "dimnames")=List of 2
  .. ..$ : chr [1:50] "G1" "G2" "G3" "G4" ...
  .. ..$ : chr [1:50] "G1" "G2" "G3" "G4" ...

Is there an elegant way to obtain the mean of all these matrices without constructing double for-loops to get the average for each index across all 100 matrices? Thank you.

Upvotes: 0

Views: 81

Answers (1)

josliber
josliber

Reputation: 44310

If you want to get the averages of the elements in each position, you would want to sum up the elements of all_permutations and then divide by the number of elements.

If you were typing this out, you would do something like:

(all_permutations[[1]] + all_permutations[[2]] + ... ) / length(all_permutations)

Luckily, the Reduce function can save you a lot of typing (or, more likely, a for loop):

Reduce("+", all_permutations) / length(all_permutations)

Upvotes: 1

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