CODEWITHSUNDEEP
perlcgibioperl
Al007
Al007

Reputation: 383

Bioperl library installation in mysql server

I installed Bioperl and works correctly. then installed Bio::Tools::Run::Phylo::Phyml and it works good from terminal.

But when I call same script contains it from a browser to using CGI method, I get this error:

Can't locate Bio/Tools/Run/Phylo/Phyml.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl . /etc/apache2) at /var/www/Adol/mafToPhyML1.pl line 14.\nBEGIN failed--compilation aborted at /var/www/Adol/mafToPhyML1.pl line 14.

I got this message from error.log

Upvotes: 2

Views: 72

Answers (1)

pcantalupo
pcantalupo

Reputation: 2226

This post is similar to your question. You need to properly set @INC in your cgi script. Add a use lib pragma to your cgi script with the directory that contains the Bio directory of where your Phyml.pm is located.

Upvotes: 0

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