CODEWITHSUNDEEP
rigraphcytoscape
Sean Mc
Sean Mc

Reputation: 468

Cytoscape: dynamic network visualization

I’m using R to send graph objects (igraph) to Cytoscape via a RESTful API – which is working perfectly. The trouble I’m having is that the graphs are dynamic and each node/edge has a creation/end date, is it possible to do dynamic visualisation in Cytoscape? I’ve tried using a number of different plugins including dynNetwork however this looks for a network file in XGMML format.

Has anyone come across a Cytoscape plugin to do this type of work?

Or failing that, is there a R package to output igraph objects in a XGMML format?

Many thanks.

Upvotes: 1

Views: 626

Answers (1)

skyebend
skyebend

Reputation: 1109

I don't know about Cytoscape, but it is possible to visualize dynamic networks in R with the ndtv and networkDynamic packages (disclaimer, I'm the package author)

Upvotes: 2

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