CODEWITHSUNDEEP
macospycharmbiopython
Sanjarbek Hudaiberdiev
Sanjarbek Hudaiberdiev

Reputation: 25

PyCharm Mac Biopython installation

I'm a newbie in PyCharm, and using it as general IDE for python.

My problem here is that when I run my code in PyCharm, it doesn't see BioPython. It says:

Traceback (most recent call last):
File "[path-to-code]", line 9, in <module>
from Bio import SeqIO
ImportError: No module named Bio

So I went to 'Preferences->Project:code->Project structure' and added entire site-packages as content root. But then, PyCharm won't run at all and gives this error: 

Fatal Python error: PyThreadState_Get: no current thread

Anyone faced similar problem before?

Note: Console python can recognize when I import Bio, and works just fine.

Upvotes: 0

Views: 3338

Answers (1)

dting
dting

Reputation: 39287

Instead of altering your project structure, in the preferences go to Preferences > Project > Project Interpreter. Click the + and search for biopython.

enter image description here

Upvotes: 1

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