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pythonarraysnumpyscipysparse-matrix
Covich
Covich

Reputation: 2814

Convert a Diagonal Sparse Matrix to a 1-D vector

I have a big n-square diagonal matrix, in scipy's sparse DIA format (let's say n = 100000)

D_sparse = sprs.diags(np.ones(100000),0)

I'd like to retrieve the diagonal as a vector (in the numpy array)

But if I do np.diag(D_sparse.toarray()), I get a MemoryError because D_sparse.toarray() generates a huge array quasi-full of 0.

I there a method or a function to get directly the diagonal of D_sparse as an numpy array?

Upvotes: 0

Views: 621

Answers (1)

Warren Weckesser
Warren Weckesser

Reputation: 114781

The diagonal method of the dia_matrix object returns the main diagonal.

For example,

In [165]: d
Out[165]: 
<6x6 sparse matrix of type '<class 'numpy.float64'>'
    with 6 stored elements (1 diagonals) in DIAgonal format>

In [166]: d.A
Out[166]: 
array([[ 10.,   0.,   0.,   0.,   0.,   0.],
       [  0.,  11.,   0.,   0.,   0.,   0.],
       [  0.,   0.,  12.,   0.,   0.,   0.],
       [  0.,   0.,   0.,  13.,   0.,   0.],
       [  0.,   0.,   0.,   0.,  14.,   0.],
       [  0.,   0.,   0.,   0.,   0.,  15.]])

In [167]: d.diagonal()
Out[167]: array([ 10.,  11.,  12.,  13.,  14.,  15.])

Upvotes: 3

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