CODEWITHSUNDEEP
rdevtools
sahir
sahir

Reputation: 366

devtools install github ignoring certain .rda files

I'm currently testing out my R package which has two .rda files in the data/ folder which can be found here. They were created using the devtools::use_data command. They are not very large files, the largest one being 713 KB. I'm trying to install my package from GitHub using devtools:

devtools::install.github('sahirbhatnagar/manhattanly')

But for some reason only one of the two .rda files gets installed (the hapmap.rda file doesnt get installed): 

 
devtools::install_github('sahirbhatnagar/manhattanly', force = TRUE, build_vignette = TRUE)
Downloading GitHub repo sahirbhatnagar/manhattanly@master
from URL https://api.github.com/repos/sahirbhatnagar/manhattanly/zipball/master
Installing manhattanly
'/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD build  \
  '/tmp/RtmpEYJ9AG/devtools84183fc48b7d/sahirbhatnagar-manhattanly-0dead52' --no-resave-data --no-manual 

* checking for file ‘/tmp/RtmpEYJ9AG/devtools84183fc48b7d/sahirbhatnagar-manhattanly-0dead52/DESCRIPTION’ ... OK
* preparing ‘manhattanly’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘manhattanly_0.1.0.tar.gz’

'/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD INSTALL '/tmp/RtmpEYJ9AG/manhattanly_0.1.0.tar.gz'  \
  --library='/mnt/GREENWOOD_BACKUP/home/sahir.bhatnagar/Rlibs/R3.2.2' --install-tests 

* installing *source* package ‘manhattanly’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
  converting help for package ‘manhattanly’
    finding HTML links ... done
    manhattanly                             html  

    finding level-2 HTML links ... done

    manhattanr                              html  
    qqly                                    html  
    qqr                                     html  
    significantSNP                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
* DONE (manhattanly)

When I try to check the package using devtools::check() I also get an error when trying to build the vignette, saying that the hapmap object has not been found.

Any idea why this is happening? The .csv file is not that large either ~2.2 Mb

Upvotes: 1

Views: 159

Answers (1)

Thomas
Thomas

Reputation: 44525

Your .Rbuildignore file has a line:

hapmap.R

Because these are treated as regular expressions, you're telling R to ignore the hapmap.rds file, which that regex pattern also matches. Just update that with a $ or prefix the directory name to limit the regex.

Upvotes: 2

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