Newbie
Newbie

Reputation: 741

SPARK : How to generate s3 file path dynamically using date diff

I am trying to get the list of files between startDate and endDate and read the files from these folders :

For example my file structure looks like this: BucketName/year/month/day/files

   s3://testBucket/2016/10/16/part00000

These files are all jsons. The issue is I need to load all paths between starDate and end Date :

With start day(10/16/2016) and end date (09/16/2016) I would like to read from 09/16/2016(inclusive) ....to .... 10/16/2016 (inclusive)

    import org.joda.time.Days
    import org.joda.time.DurationFieldType
    import org.joda.time.LocalDate
    import org.joda.time.format.DateTimeFormat
    import org.joda.time.format.DateTimeFormatter

    val s3Bucket: String = "S3://myTestBucket/"

    val startTimestamp: String = "2016-09-16T00:00:00Z"
    val endTimestamp: String = "2016-10-16T00:00:00Z"

    val dtf: DateTimeFormatter = DateTimeFormat.forPattern( "yyyy-MMM-dd" )
    val startDate: LocalDate = dtf.parseLocalDate( startTimestamp )

    val endDate: LocalDate = dtf.parseLocalDate( endTimestamp )


    val days: Int = Days.daysBetween( startDate, endDate ).getDays

    System.out.print( days )

    val dates = new ListBuffer[String]()
    var i: Int = 0
    while (i < days) {
      {
        val d: LocalDate = startDate.withFieldAdded( DurationFieldType.days, i )
        val tempDate: String = s3Bucket + d.getYear + "/" + d.getMonthOfYear + "/" + d.getDayOfMonth + "/" + "*"
        dates += tempDate
      }
      {
        i += 1; 
      }
    }
    val dateList = dates.toList
    val files = dateList.mkString(", ")
    sqlContext.read.json(files)

Is this right way to do this ? Is there any other efficient way to do this ?

based on the give solution I get this error :

org.apache.spark.SparkException: Job 2 cancelled because SparkContext was shut down
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$cleanUpAfterSchedulerStop$1.apply(DAGScheduler.scala:806)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$cleanUpAfterSchedulerStop$1.apply(DAGScheduler.scala:804)
    at scala.collection.mutable.HashSet.foreach(HashSet.scala:79)
    at org.apache.spark.scheduler.DAGScheduler.cleanUpAfterSchedulerStop(DAGScheduler.scala:804)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onStop(DAGScheduler.scala:1658)
    at org.apache.spark.util.EventLoop.stop(EventLoop.scala:84)
    at org.apache.spark.scheduler.DAGScheduler.stop(DAGScheduler.scala:1581)
    at org.apache.spark.SparkContext$$anonfun$stop$7.apply$mcV$sp(SparkContext.scala:1731)
    at org.apache.spark.util.Utils$.tryLogNonFatalError(Utils.scala:1229)
    at org.apache.spark.SparkContext.stop(SparkContext.scala:1730)
    at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend$MonitorThread.run(YarnClientSchedulerBackend.scala:147)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1832)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1845)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1858)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1929)
    at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:927)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:316)
    at org.apache.spark.rdd.RDD.collect(RDD.scala:926)
    at org.apache.spark.sql.sources.HadoopFsRelation$.listLeafFilesInParallel(interfaces.scala:904)
    at org.apache.spark.sql.sources.HadoopFsRelation$FileStatusCache.listLeafFiles(interfaces.scala:445)
    at org.apache.spark.sql.sources.HadoopFsRelation$FileStatusCache.refresh(interfaces.scala:477)
    at org.apache.spark.sql.sources.HadoopFsRelation.org$apache$spark$sql$sources$HadoopFsRelation$$fileStatusCache$lzycompute(interfaces.scala:489)
    at org.apache.spark.sql.sources.HadoopFsRelation.org$apache$spark$sql$sources$HadoopFsRelation$$fileStatusCache(interfaces.scala:487)
    at org.apache.spark.sql.sources.HadoopFsRelation.cachedLeafStatuses(interfaces.scala:494)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation$$anonfun$4.apply(JSONRelation.scala:110)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation$$anonfun$4.apply(JSONRelation.scala:109)
    at scala.Option.getOrElse(Option.scala:120)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation.dataSchema$lzycompute(JSONRelation.scala:109)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation.dataSchema(JSONRelation.scala:108)
    at org.apache.spark.sql.sources.HadoopFsRelation.schema$lzycompute(interfaces.scala:636)
    at org.apache.spark.sql.sources.HadoopFsRelation.schema(interfaces.scala:635)
    at org.apache.spark.sql.execution.datasources.LogicalRelation.<init>(LogicalRelation.scala:37)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:125)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:136)
    at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:263)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:58)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:63)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:65)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:67)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:69)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:71)
    at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:73)
    at $iwC$$iwC$$iwC$$iwC.<init>(<console>:75)
    at $iwC$$iwC$$iwC.<init>(<console>:77)
    at $iwC$$iwC.<init>(<console>:79)
    at $iwC.<init>(<console>:81)
    at <init>(<console>:83)
    at .<init>(<console>:87)
    at .<clinit>(<console>)
    at .<init>(<console>:7)
    at .<clinit>(<console>)
    at $print(<console>)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:483)
    at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
    at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
    at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
    at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
    at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
    at org.apache.zeppelin.spark.SparkInterpreter.interpretInput(SparkInterpreter.java:664)
    at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:629)
    at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:622)
    at org.apache.zeppelin.interpreter.ClassloaderInterpreter.interpret(ClassloaderInterpreter.java:57)
    at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:93)
    at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:276)
    at org.apache.zeppelin.scheduler.Job.run(Job.java:170)
    at org.apache.zeppelin.scheduler.FIFOScheduler$1.run(FIFOScheduler.java:118)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
    at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)

Upvotes: 1

Views: 2714

Answers (1)

Tzach Zohar
Tzach Zohar

Reputation: 37852

I don't think it can be much more efficient, but it's definitely not idiomatic (using while and var) and can be made shorter and more concise:

val s3Bucket: String = "S3://myTestBucket/"
val startDate: LocalDate = new LocalDate(2016, 9, 16)
val endDate: LocalDate = new LocalDate(2016, 10, 16)

val days: Int = Days.daysBetween(startDate, endDate).getDays

val pathDTF = DateTimeFormat.forPattern("yyyy/MM/dd")

val files: Seq[String] = (0 to days)
  .map(startDate.plusDays)
  .map(d => s"$s3Bucket${pathDTF.print(d)}/*")

val result = sqlContext.read.json(files: _*) 

EDIT: thanks @Newbie for noticing - indeed one cannot pass a list of files to read.json(...), so the last line should be:

val result = sqlContext.read.json(sc.textFile(files.mkString(",")))

Upvotes: 3

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