CODEWITHSUNDEEP
rcsvdatetimeposixcttimestamp-with-timezone
prinz_minz
prinz_minz

Reputation: 49

Timezone in timestamps imported from csv

I have a dataframe imported with fread from a csv file (converted from .xlsx). After import, class(inputData$timestamp) is Posixct and attr(inputData$timestamp, "tzone") is "".

As explained in this thread, I'm trying to split the dataframes by day, but they get split at 2am: 

byDay <- split(inputData, as.Date(inputData$timestamp))
> byDay[[1]]
              timestamp value
1   2016-09-05 00:01:00     0
2   2016-09-05 00:02:00     0
3   2016-09-05 00:03:00     0
[...]
118 2016-09-05 01:58:00     0
119 2016-09-05 01:59:00     0

>byDay[[2]]
              timestamp value
120 2016-09-05 02:00:00     0
121 2016-09-05 02:01:00     0
122 2016-09-05 02:02:00     0
[...]
1558 2016-09-06 01:58:00    0
1559 2016-09-06 01:59:00    0

and so on.

I understand the date is implicitly different from what's shown on the timestamp: 

> byDay[[1]]$timestamp[1]
"2016-09-05 00:01:00"
> as.Date(byDay[[1]]$timestamp[1])
"2016-09-04"

I'm not interested in timezones so I tried just setting all dates to UTC:

> attr(inputData$timestamp, "tzone") <- "UTC"
> byDay <- split(inputData, as.Date(inputData$timestamp))
> byDay[[1]]
              timestamp apAvg
1   2016-09-04 22:01:00     0
2   2016-09-04 22:02:00     0
3   2016-09-04 22:03:00     0
[...]
117 2016-09-04 23:57:00     0
118 2016-09-04 23:58:00     0
119 2016-09-04 23:59:00     0

This implies the timestamps actually start at 22:00. However in the csv file, the first timestamp is 05.09.2016 00:00:00 and I can't see a sign of timezone formatting. Is there still a possibility that the timezone problems come from the csv file? Or do I handle the timestamps wrong in R? How to deal with this accurately?

Upvotes: 1

Views: 2217

Answers (1)

aichao
aichao

Reputation: 7435

I would follow @alistaire's advice in setting the time zone when parsing from string. In fact, this appears to have happened since

attr(inputData$timestamp, "tzone") is ""

afterwards and "" is the default to set the data to your local timezone.

The issue is that in using as.Date with a class POSIXct input, the default for tz is "UTC" and not your local timezone. To get what you want:

  1. Do not change the data's timezone to "UTC"
  2. Use as.Date(inputData$timestamp, tz="") in your split.

To illustrate, let's say the data is:

inputData<- structure(list(timestamp = structure(c(1473048000, 1473051600, 
1473055200, 1473058800, 1473062400, 1473066000, 1473069600, 1473073200, 
1473076800, 1473080400, 1473084000, 1473087600, 1473091200, 1473094800, 
1473098400, 1473102000, 1473105600, 1473109200, 1473112800, 1473116400, 
1473120000, 1473123600, 1473127200, 1473130800, 1473134400, 1473134460, 
1473134520, 1473134580), class = c("POSIXct", "POSIXt"), tzone = ""), 
    value = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 
    0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 
    0L)), .Names = c("timestamp", "value"), row.names = c(NA, 
-28L), class = "data.frame")
##             timestamp value
##1  2016-09-05 00:00:00     0
##2  2016-09-05 01:00:00     0
##3  2016-09-05 02:00:00     0
##4  2016-09-05 03:00:00     0
##5  2016-09-05 04:00:00     0
##6  2016-09-05 05:00:00     0
##7  2016-09-05 06:00:00     0
##8  2016-09-05 07:00:00     0
##9  2016-09-05 08:00:00     0
##10 2016-09-05 09:00:00     0
##11 2016-09-05 10:00:00     0
##12 2016-09-05 11:00:00     0
##13 2016-09-05 12:00:00     0
##14 2016-09-05 13:00:00     0
##15 2016-09-05 14:00:00     0
##16 2016-09-05 15:00:00     0
##17 2016-09-05 16:00:00     0
##18 2016-09-05 17:00:00     0
##19 2016-09-05 18:00:00     0
##20 2016-09-05 19:00:00     0
##21 2016-09-05 20:00:00     0
##22 2016-09-05 21:00:00     0
##23 2016-09-05 22:00:00     0
##24 2016-09-05 23:00:00     0
##25 2016-09-06 00:00:00     0
##26 2016-09-06 00:01:00     0
##27 2016-09-06 00:02:00     0
##28 2016-09-06 00:03:00     0

with:

attr(inputData$timestamp, "tzone")
##[1] ""

Doing your split using as.Date with the default tz parameter:

byDay <- split(inputData, as.Date(inputData$timestamp))
byDay[[1]]
##             timestamp value
##1  2016-09-05 00:00:00     0
##2  2016-09-05 01:00:00     0
##3  2016-09-05 02:00:00     0
##4  2016-09-05 03:00:00     0
## ...
##17 2016-09-05 16:00:00     0
##18 2016-09-05 17:00:00     0
##19 2016-09-05 18:00:00     0
##20 2016-09-05 19:00:00     0
byDay[[2]]
##             timestamp value
##21 2016-09-05 20:00:00     0
##22 2016-09-05 21:00:00     0
##23 2016-09-05 22:00:00     0
##24 2016-09-05 23:00:00     0
##25 2016-09-06 00:00:00     0
##26 2016-09-06 00:01:00     0
##27 2016-09-06 00:02:00     0
##28 2016-09-06 00:03:00     0

Now, I'm on the east coast of the United States so I'm on EDT now. This is why 22:00:00 here is split to the next day in UTC. Do the same split with as.Date(inputData$timestamp,tz=""):

byDay <- split(inputData, as.Date(inputData$timestamp,tz=""))
byDay[[1]]
##             timestamp value
##1  2016-09-05 00:00:00     0
##2  2016-09-05 01:00:00     0
##3  2016-09-05 02:00:00     0
##4  2016-09-05 03:00:00     0
## ...
##21 2016-09-05 20:00:00     0
##22 2016-09-05 21:00:00     0
##23 2016-09-05 22:00:00     0
##24 2016-09-05 23:00:00     0
byDay[[2]]
##             timestamp value
##25 2016-09-06 00:00:00     0
##26 2016-09-06 00:01:00     0
##27 2016-09-06 00:02:00     0
##28 2016-09-06 00:03:00     0

Upvotes: 1

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