Reputation: 32558
Is there a way to fill violin plots with different patterns when using vioplot
package to create plots in R?
I have figured out how to change color using col as shown below. But I don't even know how to begin with hatching in vioplot.
vioplot(random_value, at = 0.5, add = T, h = 0.04, col = 'lightsalmon4')
I have used density
and angle
but those don't help.
Upvotes: 0
Views: 743
Reputation: 32558
I am answering my own question just in case it might be useful to someone else later. It seems like vioplot
package itself does not allow "hatching" or "texture" in the violin plot it creates. However, it seems like it can be achieved by making small changes to the default vioplot
function to incorporate density
and angle
to the polygon it creates as the violin plots.
vioplot2 = function (x, ..., range = 1.5, h = NULL, ylim = NULL, names = NULL,
horizontal = FALSE, col = "magenta", border = "black", lty = 1,
lwd = 1, rectCol = "black", density = NA, angle = 45, colMed = "white", pchMed = 19,
at, add = FALSE, wex = 1, drawRect = TRUE)
{
datas <- list(x, ...)
n <- length(datas)
if (missing(at))
at <- 1:n
upper <- vector(mode = "numeric", length = n)
lower <- vector(mode = "numeric", length = n)
q1 <- vector(mode = "numeric", length = n)
q3 <- vector(mode = "numeric", length = n)
med <- vector(mode = "numeric", length = n)
base <- vector(mode = "list", length = n)
height <- vector(mode = "list", length = n)
baserange <- c(Inf, -Inf)
args <- list(display = "none")
if (!(is.null(h)))
args <- c(args, h = h)
for (i in 1:n) {
data <- datas[[i]]
data.min <- min(data)
data.max <- max(data)
q1[i] <- quantile(data, 0.25)
q3[i] <- quantile(data, 0.75)
med[i] <- median(data)
iqd <- q3[i] - q1[i]
upper[i] <- min(q3[i] + range * iqd, data.max)
lower[i] <- max(q1[i] - range * iqd, data.min)
est.xlim <- c(min(lower[i], data.min), max(upper[i],
data.max))
smout <- do.call("sm.density", c(list(data, xlim = est.xlim),
args))
hscale <- 0.4/max(smout$estimate) * wex
base[[i]] <- smout$eval.points
height[[i]] <- smout$estimate * hscale
t <- range(base[[i]])
baserange[1] <- min(baserange[1], t[1])
baserange[2] <- max(baserange[2], t[2])
}
if (!add) {
xlim <- if (n == 1)
at + c(-0.5, 0.5)
else range(at) + min(diff(at))/2 * c(-1, 1)
if (is.null(ylim)) {
ylim <- baserange
}
}
if (is.null(names)) {
label <- 1:n
}
else {
label <- names
}
boxwidth <- 0.05 * wex
if (!add)
plot.new()
if (!horizontal) {
if (!add) {
plot.window(xlim = xlim, ylim = ylim)
axis(2)
axis(1, at = at, label = label)
}
box()
for (i in 1:n) {
polygon(c(at[i] - height[[i]], rev(at[i] + height[[i]])),
c(base[[i]], rev(base[[i]])), col = col, density = density, angle = angle, border = border,
lty = lty, lwd = lwd)
if (drawRect) {
lines(at[c(i, i)], c(lower[i], upper[i]), lwd = lwd,
lty = lty)
rect(at[i] - boxwidth/2, q1[i], at[i] + boxwidth/2,
q3[i], col = rectCol)
points(at[i], med[i], pch = pchMed, col = colMed)
}
}
}
else {
if (!add) {
plot.window(xlim = ylim, ylim = xlim)
axis(1)
axis(2, at = at, label = label)
}
box()
for (i in 1:n) {
polygon(c(base[[i]], rev(base[[i]])), c(at[i] - height[[i]],
rev(at[i] + height[[i]])), col = col, density = density, angle = angle, border = border,
lty = lty, lwd = lwd)
if (drawRect) {
lines(c(lower[i], upper[i]), at[c(i, i)], lwd = lwd,
lty = lty)
rect(q1[i], at[i] - boxwidth/2, q3[i], at[i] +
boxwidth/2, col = rectCol)
points(med[i], at[i], pch = pchMed, col = colMed)
}
}
}
invisible(list(upper = upper, lower = lower, median = med,
q1 = q1, q3 = q3))
}
USAGE
set.seed(42)
x = rnorm(50,20,4)
vioplot2(x,density = 9, angle = 20)
Upvotes: 2