CODEWITHSUNDEEP
pythonnetcdfpython-xarray
braaannigan
braaannigan

Reputation: 874

Xarray - DataArray opens as a Dataset

I'm opening netcdf output produced by MITgcm using open_dataset. However, one of the coordinate variables in the DataSet is coming back as the whole DataSet rather than a DataArray.

The process seems to work normally:

import xarray as xr
ds = xr.open_dataset('state.0000000000.nc')

<xarray.Dataset>
Dimensions:      (T: 8, X: 16, Xp1: 17, Y: 16, Yp1: 17, Zld000100: 100, Zmd000100: 100)

Coordinates:
  * T            (T) float64 1.296e+05 3.888e+05 6.48e+05 
  * X            (X) float64 500.0 1.5e+03 2.5e+03 
  * Y            (Y) float64 4.85e+04 4.95e+04 
  * Xp1          (Xp1) float64 0.0 1e+03 2e+03 
  * Yp1          (Yp1) float64 4.8e+04 4.9e+04 
  * Zmd000100    (Zmd000100) int64 0 1 2
  * Zld000100    (Zld000100) int64 0 1 2 
Data variables:
    iter         (T) int32 1296 3888 
    diag_levels  (Zmd000100) float64 1.0

(where I've omitted some of the details of the output). However, when I check the type of the T coordinate, it comes back as a DataSet 

type(ds.T)
# xarray.core.dataset.Dataset

When I check the type of any of the other coordinates/variables, they come back as

xarray.core.dataarray.DataArray

The ds.T coordinate appears to be the same object as ds. For example, if I add a variable to ds, it also is added to ds.T. It also seems to be infinitely recursive, such that ds.T.T.T is the same object for example.

In the underlying netcdf files, the only difference between the T dimension and the others is that T has unlimited dimension.

T = UNLIMITED ; // (4 currently)

However, I've created a dummy netcdf file that has an unlimited dimension and the problem didn't recur.

I've tried it with decode_times, decode_cf and decide_coords=False with no difference.

I'm using xarray version 0.8.2, running python 2.7.12.

Upvotes: 0

Views: 885

Answers (1)

shoyer
shoyer

Reputation: 9593

You need to access the variable T like ds['T']. ds.T does a transpose. See also: How to read a variable called "T" with xarray?

Upvotes: 3

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