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pythonpandas
AlC
AlC

Reputation: 73

Creating a histogram for each value in multi-index pandas dataframe

Below is a small section from my pandas dataframe. I would like to be able to get separate 'vel_x' histograms (counts, bins) for each value in count. Is there a fast, built-in way to do this without just looping through each value in count?

+-------+-------+-------+-------+--------+----+--------+
|       |       | x_loc | y_loc | vel_x  | …  |  vel_z |
+-------+-------+-------+-------+--------+----+--------+
| count | slice |       |       |        |    |        |
|   1   | 3     |     4 |     0 |     96 | 88 |     35 |
|       | 4     |    10 |     2 |     54 | 42 |     37 |
|       | 5     |     9 |    32 |      8 | 70 |     34 |
|       | 6     |    36 |    89 |     69 | 46 |     78 |
|   2   | 5     |    17 |    41 |     48 | 45 |     71 |
|       | 6     |    50 |    66 |     82 | 72 |     59 |
|       | 7     |    14 |    24 |     55 | 20 |     89 |
|       | 8     |    76 |    36 |     13 | 14 |     21 |
|   3   | 5     |    97 |    19 |     41 | 61 |     72 |
|       | 6     |    22 |     4 |     56 | 82 |     15 |
|       | 7     |    17 |    57 |     30 | 63 |     88 |
|       | 8     |    83 |    43 |     35 |  8 |      4 |
+-------+-------+-------+-------+--------+----+--------+

I have tried many methods (apply, map, etc.), but I have not been able to get any of them to work. Each method just applies the mapped function to all the row values.

Essentially, I want to map this to each value in count (count_value) below:

def create_histogram(data, count_value):
    values, bin_edges = np.histogram(data.loc[count_value, 'vel_x'])
    return values

then something like this:

data.index.get_level_values('Count').map(create_histrogram(data))

Also, for reference, this is the way I can currently perform what I want, but it is not very efficient because my dataframe is very large.

for count_value in data.index.get_level_values('Count').unique:
    values, bin_edges = np.histogram(data.loc[count_value, 'vel_x'])

the returned values can then be stored in another array.

Thank you in advance for your help!

Upvotes: 0

Views: 2732

Answers (1)

Yohanes Gultom
Yohanes Gultom

Reputation: 3842

How about using groupby with level param:

level : int, level name, or sequence of such, default None If the axis is a MultiIndex (hierarchical), group by a particular level or levels

for count, sdf in df.groupby(level=0):
    values, bin_edges = np.histogram(sdf.loc[count, 'vel_x'])

UPDATE

Since you think the way mean(level=level) works is better, you can also try this way which is inspired by mean source code:

df['vel_x'].groupby(level=0).aggregate(np.histogram)

Upvotes: 3

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