CODEWITHSUNDEEP
r
Al14
Al14

Reputation: 1814

wilcox.test get all the info test

df <- read.table(header=TRUE, text='
  presence Var3 Var1 Var2
                              N     7.9  12.3  10.7
                              N     6.3  10.6  11.1
                              N     9.5  13.1  13.8
                              Y    33.2  13.4  12.9
                              Y     6.3  11.6  11.1
                              Y    14.5  13.8  12.9
                           ')

I run a wilcox.test for multiple column of a dataframe 

 test_pw<- lapply(2:4, function(x) pairwise.wilcox.test(df[[x]], df$presence, mu=0))

I can only see the pvalue, however I would like to get more info regarding the test such as V (W) 

    Pairwise comparisons using Wilcoxon rank sum test 

data:  df[[x]] and df$presence 

  H   
N 0.31

P value adjustment method: holm

something like that

Wilcoxon signed rank test

data:  df$Var1 by df$presence
V = 21, p-value = 0.03125
alternative hypothesis: true location shift is not equal to 0

when I run

lapply(test_pw, summary)

I get for each variable this:

[[3]]
                Length Class  Mode     
method          1      -none- character
data.name       1      -none- character
p.value         1      -none- numeric  
p.adjust.method 1      -none- character

Upvotes: 1

Views: 269

Answers (1)

Julian Wittische
Julian Wittische

Reputation: 1237

I think simply adding summary() inside your function should work.

test_pw<- lapply(3:5, function(x) summary(pairwise.wilcox.test(df[[x]], df$presence, mu=0)))

Upvotes: 1

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