Reputation: 64074
I have the following data frame:
df <- structure(list(some_score = c(0.159908755191963, 0.191316882518594, 0.505115802144402,
0.137543374720433, 0.00611518542460786, 0.17817657028984, 0.184484678282946,
0.389765901467282, 0.240839237211809, 0.00673361274812246), crt = c(0.137543374720433,
0.137543374720433, 0.137543374720433, 0.137543374720433, 0.137543374720433,
0.17817657028984, 0.17817657028984, 0.17817657028984, 0.17817657028984,
0.17817657028984), sr = c(0.374378046673855, 0.374378046673855, 0.374378046673855,
0.374378046673855, 0.374378046673855, 0.115542340010558, 0.115542340010558,
0.115542340010558, 0.115542340010558, 0.115542340010558), sample = structure(c(1L,
1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L), .Label = c("Sample1", "Sample2"), class = "factor"),
celltype = c("B", "Mac", "NK", "Neu", "Stro", "B", "Mac", "NK", "Neu", "Stro")),
.Names = c("some_score", "crt", "sr", "sample", "celltype"), row.names = c(NA,
10L), class = "data.frame")
df
#> some_score crt sr sample celltype
#> 1 0.159908755 0.1375434 0.3743780 Sample1 B
#> 2 0.191316883 0.1375434 0.3743780 Sample1 Mac
#> 3 0.505115802 0.1375434 0.3743780 Sample1 NK
#> 4 0.137543375 0.1375434 0.3743780 Sample1 Neu
#> 5 0.006115185 0.1375434 0.3743780 Sample1 Stro
#> 6 0.178176570 0.1781766 0.1155423 Sample2 B
#> 7 0.184484678 0.1781766 0.1155423 Sample2 Mac
#> 8 0.389765901 0.1781766 0.1155423 Sample2 NK
#> 9 0.240839237 0.1781766 0.1155423 Sample2 Neu
#> 10 0.006733613 0.1781766 0.1155423 Sample2 Stro
This is the plotting code:
tableau10 <- c("#17BECF", "#BCBD22", "#7F7F7F", "#CFECF9", "#8C564B", "#9467BD", "#D62728", "#2CA02C", "#FF7F0E", "#1F77B4" )
ggplot(df, aes(x=celltype,y=some_score, fill=celltype)) +
geom_bar(stat="identity") +
scale_fill_manual(values=tableau10) +
geom_hline(aes(yintercept=crt), colour="red", linetype="dashed") +
theme_minimal(base_size=20) +
theme(strip.background=element_blank(),strip.text = element_text(size=10)) +
theme(legend.title=element_blank()) +
theme(axis.text.y=element_text( hjust=1,size=10)) +
facet_wrap(~sample)
As shown in the plot that I want to use ggtitle
that incorporate values in sr
and crt
column in the df
. How can I do that?
Upvotes: 2
Views: 2037
Reputation: 17678
You can try:
# function to round the values. As they are characters you have to use a string manipulation
round_string <- function(string) substr(string, 1, 5)
# the plot
ggplot(df, aes(x=celltype,y=some_score, fill=celltype)) +
geom_bar(stat="identity") +
scale_fill_manual(values=tableau10) +
geom_hline(aes(yintercept=crt), colour="red", linetype="dashed") +
theme_minimal(base_size=20) +
theme(strip.background=element_blank(),strip.text = element_text(size=10)) +
theme(legend.title=element_blank()) +
theme(axis.text.y=element_text( hjust=1,size=10)) +
facet_wrap(~sample + crt + sr,labeller = labeller(crt=as_labeller(round_string, default = label_both),
sr=as_labeller(round_string, default = label_both),
.multi_line = F))
Upvotes: 2
Reputation: 1421
Very Basic solution. You can add CRT
yourself (sorry did not get so much time now)...
ggplot(df, aes(x=celltype,y=some_score, fill=celltype)) +
geom_bar(stat="identity") +
scale_fill_manual(values=tableau10) +
geom_hline(aes(yintercept=crt), colour="red", linetype="dashed") +
theme_minimal(base_size=20) +
theme(strip.background=element_blank(),strip.text = element_text(size=10)) +
theme(legend.title=element_blank()) +
theme(axis.text.y=element_text( hjust=1,size=10)) +
facet_wrap(~paste(as.character(sample), paste("SR = ",round(df$sr,2) )))
With the idea of @Jimbou (labeller) the outcome is really nice too
facet_wrap(~sample+crt+sr,
labeller = labeller(crt=label_both, sr = label_both, .multi_line = F))
and you get
Upvotes: 3