CODEWITHSUNDEEP
pythonwindowsscipypippycharm
Anand Zutshi
Anand Zutshi

Reputation: 125

Scipy not installing in windows machine

I was trying to install Scipy on Pycharm via Project Interpretor. Then it showed an error saying I should try typing pip install scipy on cmd. I did that and got the following error. It is still showing that it is not installed.

Collecting scipy
  Using cached scipy-0.19.0.zip
Building wheels for collected packages: scipy
  Running setup.py bdist_wheel for scipy ... error
  Complete output from command d:\softwares\python3.6.1\python.exe -u -c "import
 setuptools, tokenize;__file__='C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip-b
uild-k8_u1d9i\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code
=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))"
 bdist_wheel -d C:\Users\ADMINI~1\AppData\Local\Temp\tmpodq2p8aqpip-wheel- --pyt
hon-tag cp36:
  lapack_opt_info:
  lapack_mkl_info:
    libraries mkl_rt not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\', 'd
:\\softwares\\python3.6.1\\libs']
    NOT AVAILABLE

  openblas_lapack_info:
    libraries openblas not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\',
'd:\\softwares\\python3.6.1\\libs']
    NOT AVAILABLE

  atlas_3_10_threads_info:
  Setting PTATLAS=ATLAS
  d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:1051
: UserWarning: Specified path C:\projects\numpy-wheels\windows-wheel-builder\atl
as-builds\atlas-3.10.1-sse2-32\lib is invalid.
    pre_dirs = system_info.get_paths(self, section, key)
  <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
    NOT AVAILABLE

  atlas_3_10_info:
  <class 'numpy.distutils.system_info.atlas_3_10_info'>
    NOT AVAILABLE

  atlas_threads_info:
  Setting PTATLAS=ATLAS
  <class 'numpy.distutils.system_info.atlas_threads_info'>
    NOT AVAILABLE

  atlas_info:
  <class 'numpy.distutils.system_info.atlas_info'>
    NOT AVAILABLE

  d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:572:
 UserWarning:
      Atlas (http://math-atlas.sourceforge.net/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [atlas]) or by setting
      the ATLAS environment variable.
    self.calc_info()
  lapack_info:
    libraries lapack not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\', 'd
:\\softwares\\python3.6.1\\libs']
    NOT AVAILABLE

  d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:572:
 UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    self.calc_info()
  lapack_src_info:
    NOT AVAILABLE

  d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:572:
 UserWarning:
      Lapack (http://www.netlib.org/lapack/) sources not found.
      Directories to search for the sources can be specified in the
      numpy/distutils/site.cfg file (section [lapack_src]) or by setting
      the LAPACK_SRC environment variable.
    self.calc_info()
    NOT AVAILABLE

  Running from scipy source directory.
  non-existing path in 'scipy\\integrate': 'quadpack.h'
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.py
", line 416, in <module>
      setup_package()
    File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.py
", line 412, in setup_package
      setup(**metadata)
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\core.py", l
ine 135, in setup
      config = configuration()
    File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.py
", line 336, in configuration
      config.add_subpackage('scipy')
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 1001, in add_subpackage
      caller_level = 2)
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 970, in get_subpackage
      caller_level = caller_level + 1)
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 907, in _get_configuration_from_setup_py
      config = setup_module.configuration(*args)
    File "scipy\setup.py", line 15, in configuration
      config.add_subpackage('linalg')
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 1001, in add_subpackage
      caller_level = 2)
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 970, in get_subpackage
      caller_level = caller_level + 1)
    File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util.p
y", line 907, in _get_configuration_from_setup_py
      config = setup_module.configuration(*args)
    File "scipy\linalg\setup.py", line 20, in configuration
      raise NotFoundError('no lapack/blas resources found')
  numpy.distutils.system_info.NotFoundError: no lapack/blas resources found

  ----------------------------------------
  Failed building wheel for scipy
  Running setup.py clean for scipy
  Complete output from command d:\softwares\python3.6.1\python.exe -u -c "import
 setuptools, tokenize;__file__='C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip-b
uild-k8_u1d9i\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code
=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))"
 clean --all:

  `setup.py clean` is not supported, use one of the following instead:

    - `git clean -xdf` (cleans all files)
    - `git clean -Xdf` (cleans all versioned files, doesn't touch
                        files that aren't checked into the git repo)

  Add `--force` to your command to use it anyway if you must (unsupported).


  ----------------------------------------
  Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: scipy
  Running setup.py install for scipy ... error
    Complete output from command d:\softwares\python3.6.1\python.exe -u -c "impo
rt setuptools, tokenize;__file__='C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip
-build-k8_u1d9i\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);co
de=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec')
)" install --record C:\Users\ADMINI~1\AppData\Local\Temp\pip-6p2n9krk-record\ins
tall-record.txt --single-version-externally-managed --compile:

    Note: if you need reliable uninstall behavior, then install
    with pip instead of using `setup.py install`:

      - `pip install .`       (from a git repo or downloaded source
                               release)
      - `pip install scipy`   (last SciPy release on PyPI)


    lapack_opt_info:
    lapack_mkl_info:
      libraries mkl_rt not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\',
'd:\\softwares\\python3.6.1\\libs']
      NOT AVAILABLE

    openblas_lapack_info:
      libraries openblas not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\'
, 'd:\\softwares\\python3.6.1\\libs']
      NOT AVAILABLE

    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
    d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:10
51: UserWarning: Specified path C:\projects\numpy-wheels\windows-wheel-builder\a
tlas-builds\atlas-3.10.1-sse2-32\lib is invalid.
      pre_dirs = system_info.get_paths(self, section, key)
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE

    atlas_3_10_info:
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE

    atlas_threads_info:
    Setting PTATLAS=ATLAS
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE

    atlas_info:
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE

    d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:57
2: UserWarning:
        Atlas (http://math-atlas.sourceforge.net/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [atlas]) or by setting
        the ATLAS environment variable.
      self.calc_info()
    lapack_info:
      libraries lapack not found in ['d:\\softwares\\python3.6.1\\lib', 'C:\\',
'd:\\softwares\\python3.6.1\\libs']
      NOT AVAILABLE

    d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:57
2: UserWarning:
        Lapack (http://www.netlib.org/lapack/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [lapack]) or by setting
        the LAPACK environment variable.
      self.calc_info()
    lapack_src_info:
      NOT AVAILABLE

    d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\system_info.py:57
2: UserWarning:
        Lapack (http://www.netlib.org/lapack/) sources not found.
        Directories to search for the sources can be specified in the
        numpy/distutils/site.cfg file (section [lapack_src]) or by setting
        the LAPACK_SRC environment variable.
      self.calc_info()
      NOT AVAILABLE

    Running from scipy source directory.
    non-existing path in 'scipy\\integrate': 'quadpack.h'
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.
py", line 416, in <module>
        setup_package()
      File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.
py", line 412, in setup_package
        setup(**metadata)
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\core.py",
 line 135, in setup
        config = configuration()
      File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\setup.
py", line 336, in configuration
        config.add_subpackage('scipy')
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 1001, in add_subpackage
        caller_level = 2)
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 970, in get_subpackage
        caller_level = caller_level + 1)
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 907, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "scipy\setup.py", line 15, in configuration
        config.add_subpackage('linalg')
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 1001, in add_subpackage
        caller_level = 2)
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 970, in get_subpackage
        caller_level = caller_level + 1)
      File "d:\softwares\python3.6.1\lib\site-packages\numpy\distutils\misc_util
.py", line 907, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "scipy\linalg\setup.py", line 20, in configuration
        raise NotFoundError('no lapack/blas resources found')
    numpy.distutils.system_info.NotFoundError: no lapack/blas resources found

    ----------------------------------------
Command "d:\softwares\python3.6.1\python.exe -u -c "import setuptools, tokenize;
__file__='C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip-build-k8_u1d9i\\scipy\\
setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\
n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\U
sers\ADMINI~1\AppData\Local\Temp\pip-6p2n9krk-record\install-record.txt --single
-version-externally-managed --compile" failed with error code 1 in C:\Users\ADMI
NI~1\AppData\Local\Temp\pip-build-k8_u1d9i\scipy\

Kindly help. Thank you. :)

Upvotes: 1

Views: 711

Answers (1)

Giordano
Giordano

Reputation: 5570

You can try to use an unofficial installer for SciPy.
Here you can find the link with all unofficial installer, please search and open the scipy link in the list.

Keep in mind to choose the right version, in this way:

  1. cp = python version (i.e. cp27 = Pythonv2.7)
  2. win_amd64 = x86_64 or win32 = windows 32 bit

Download it and then install it with the following command

pip install --user <scipy.whl>

for example the following command install scipy v.0.19.0, for Python2.7 and for windowns 32:

pip install --user scipy‑0.19.0‑cp27‑cp27m‑win32.whl

Upvotes: 1

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