CODEWITHSUNDEEP
routput
Manuel R
Manuel R

Reputation: 4145

Suppress automatic output to console in R

The function callmultmoments computes moments of the normal distribution. The function automatically prints "Sum of powers is odd. Moment is 0." if the sume of the powers is odd. Is there any way to supress that under the condition that the original function should stay untouched.

Ex:

require(symmoments)
# Compute the moment for the 4-dimensional moment c(1,1,3,4):

m.1134 <- callmultmoments(c(1,1,3,4))

EDIT:

As described here we can use

## Windows
sink("nul") 
...
sink()

## UNIX
sink("/dev/null")    # now suppresses
....                 # do stuff
sink()               # to undo prior suppression, back to normal now

However, I am writing a package so I want it to be platform independent. Any ideas what to do instead?

Upvotes: 19

Views: 22256

Answers (3)

Bill Anderson
Bill Anderson

Reputation: 41

If the function you are using is Barnard::barnard.test the following works:

invisible(capture.output(abc <- barnard.test(8,14,1,3)))

But if you use just the invisible or just the capture.output functions, you still have the unwanted printing.

Warning: if you do it the way I suggest, do not later print abc. You will get a lot of stuff you don't want. Rather, just grab the parts you really want, for example abc$p.value.

Upvotes: 0

hplieninger
hplieninger

Reputation: 3494

The issue is due to the fact that the function has multiple print statements, where stop, warning, or message would have been appropriate so that people can use suppressWarnings or suppressMessages.

You can work arount it using invisible(capture.output()) around your whole assignment (not just the right side). 

f1 <- function(n, ...){
    print("Random print statement")
    cat("Random cat statement\n")
    rnorm(n = n, ...)
}

f1(2)
#> [1] "Random print statement"
#> Random cat statement
#> [1] -0.1115004 -1.0830523
invisible(capture.output(x <- f1(2)))
x
#> [1]  0.0464493 -0.1453540

See also suppress messages displayed by "print" instead of "message" or "warning" in R.

Upvotes: 31

Kem Phillips
Kem Phillips

Reputation: 9

This message from callmultmoments can be suppressed by simply avoiding a moment that is not even. Any odd central moment, such as c(1,1,3,4) as in your example will have an expected value of 0 mathematically. That is, the expected value of a CENTRAL moment such as E[X^1 Y^1 Z^3 W^4], where the sum of powers, such as 1+1+3+4, is odd is automatically 0.

Upvotes: -1

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