Deepu
Reputation: 1
Parsing a uniprot flat file
Can anybody please let me know or help with parsing a uniprot flat file and access the information in the annotation (FT) line and produce an output file in python script. FT line is the on in a general uniprot flat file describing the nature of the proteins. Script written to this must produce an output file with the information in this line.
Upvotes: 0
Views: 1337
Answers (1)
ncoghlan
Reputation: 41546
I suggest looking at biopython: http://biopython.org
In particular, their SeqIO module: http://biopython.org/wiki/SeqIO
Upvotes: 1
Related Questions
- Parse flat-file (positional text-file) to read a column
- How to parse this text file?
- Parsing out data from a flat file
- Parsing file via Python
- Parsing the text in a file
- What's the best way(error proof / foolproof) to parse a file using python with following format?
- Parsing a file with Python
- Looking for a strategy for parsing a file
- Python: Parse Text File
- Parsing unstructured text in Python