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pythonarraysnumpymultidimensional-arraydiagonal
gerrit
gerrit

Reputation: 26445

Construct (N+1)-dimensional diagonal matrix from values in N-dimensional array

I have an N-dimensional array. I want to expand it to an (N+1)-dimensional array by putting the values of the final dimension in the diagonal.

For example, using explicit looping:

In [197]: M = arange(5*3).reshape(5, 3)

In [198]: numpy.dstack([numpy.diag(M[i, :]) for i in range(M.shape[0])]).T
Out[198]: 
array([[[ 0,  0,  0],
        [ 0,  1,  0],
        [ 0,  0,  2]],

       [[ 3,  0,  0],
        [ 0,  4,  0],
        [ 0,  0,  5]],

       [[ 6,  0,  0],
        [ 0,  7,  0],
        [ 0,  0,  8]],

       [[ 9,  0,  0],
        [ 0, 10,  0],
        [ 0,  0, 11]],

       [[12,  0,  0],
        [ 0, 13,  0],
        [ 0,  0, 14]]])

which is a 5×3×3 array.

My actual arrays are large and I would like to avoid explicit looping (hiding the looping in map instead of a list comprehension has no performance gain; it's still a loop). Although numpy.diag works for constructing a regular, 2-D diagonal matrix, it does not extend to higher dimensions (when given a 2-D array, it will extract its diagonal instead). The array returned by numpy.diagflat makes everything into one big diagonal, resulting in a 15×15 array which has far more zeroes and cannot be reshaped into 5×3×3.

Is there a way to efficiently construct an (N+1)-diagonal matrix from the values in a N-dimensional array, without calling diag many times?

Upvotes: 6

Views: 1731

Answers (3)

Paul Panzer
Paul Panzer

Reputation: 53029

You can use an almost-impossible-to-guess-if-you-don't-know feature of the ubiquitous np.einsum. When used as follows einsum will return a writable view of the generalized diagonal:

>>> import numpy as np
>>> M = np.arange(5*3).reshape(5, 3)
>>> 
>>> out = np.zeros((*M.shape, M.shape[-1]), M.dtype)
>>> np.einsum('...jj->...j', out)[...] = M
>>> out
array([[[ 0,  0,  0],
        [ 0,  1,  0],
        [ 0,  0,  2]],

       [[ 3,  0,  0],
        [ 0,  4,  0],
        [ 0,  0,  5]],

       [[ 6,  0,  0],
        [ 0,  7,  0],
        [ 0,  0,  8]],

       [[ 9,  0,  0],
        [ 0, 10,  0],
        [ 0,  0, 11]],

       [[12,  0,  0],
        [ 0, 13,  0],
        [ 0,  0, 14]]])

Upvotes: 4

user2357112
user2357112

Reputation: 280426

Use numpy.diagonal to take a view of the relevant diagonals of a properly-shaped N+1-dimensional array, force the view to be writeable with setflags, and write to the view:

expanded = numpy.zeros(M.shape + M.shape[-1:], dtype=M.dtype)

diagonals = numpy.diagonal(expanded, axis1=-2, axis2=-1)
diagonals.setflags(write=True)

diagonals[:] = M

This produces your desired array as expanded.

Upvotes: 3

Swier
Swier

Reputation: 4186

A general way to turn the last dimension of a N-D array into a diagonal matrix:

We will need to reduce the dimensionality of the array, apply the numpy.diag() function to each vector, and then rebuild that to the original dimensionality + 1.

reshaping the matrix to 2 dimensional:

M.reshape(-1, M.shape[-1])

then use map to apply np.diag to that, and rebuild the matrix with an additional dimension using the following:

result.reshape([*M.shape, M.shape[-1]])

All of this combined gives the following:

result = np.array(list(map(
   np.diag,
   M.reshape(-1, M.shape[-1])
))).reshape([*M.shape, M.shape[-1]])

An example:

shape = np.arange(2,8)
M = np.arange(shape.prod()).reshape(shape)
print(M.shape)  # (2, 3, 4, 5, 6, 7)

result = np.array(list(map(np.diag, M.reshape(-1, M.shape[-1])))).reshape([*M.shape, M.shape[-1]])

print(result.shape)  # (2, 3, 4, 5, 6, 7, 7)

and res[0,0,0,0,2,:] contains the following:

array([[14,  0,  0,  0,  0,  0,  0],
       [ 0, 15,  0,  0,  0,  0,  0],
       [ 0,  0, 16,  0,  0,  0,  0],
       [ 0,  0,  0, 17,  0,  0,  0],
       [ 0,  0,  0,  0, 18,  0,  0],
       [ 0,  0,  0,  0,  0, 19,  0],
       [ 0,  0,  0,  0,  0,  0, 20]])

Upvotes: 0

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