CODEWITHSUNDEEP
rr-markdownrnotebook
beepingbopping
beepingbopping

Reputation: 180

Elegant way to embed statistic contingently in r markdown/notebook [r]

I want to embed statistics in an rMarkdown/notebook depending on whether an if test is passed.

I haven't found a question that addresses this in SO, but apologies if I've overlooked it.

Based on this link I found how to use an if statement to determine what text goes in, I can simply do:

``` {r}
this_p_value = .03


```
`r if(this_p_value<.05){"this is significant"} else {"this is not significant"}`

If I want to report the p-value I can do:

this_p_value is a significant as p= `r this_p_value`

I've got an answer that shows how you do both, but I imagine there may be a more elegant way than my posted solution (or at least a few alternatives). Apologies again if I've overlooked an SO question addressing this.

Upvotes: 0

Views: 107

Answers (2)

Benjamin
Benjamin

Reputation: 17279

Something I've played with, but never fully developed, is a set of functions to make these kinds of constructs a little more manageable in markdown. In this case, toggle_text

toggle_text <- function(condition, true, false)
{
  coll <- checkmate::makeAssertCollection()

  checkmate::assert_logical(x = condition,
                            len = 1,
                            add = coll)

  checkmate::assert_character(x = true,
                              len = 1,
                              add = coll)

  checkmate::assert_character(x = false,
                              len = 1,
                              add = coll)

  checkmate::reportAssertions(coll)

  if (condition) true
  else false
}

Which can be used as

---
title: "Untitled"
output: html_document
---

```{r}
install.packages("checkmate") #comment out if installed
library(checkmate)

toggle_text <- function(condition, true, false)
{
  coll <- checkmate::makeAssertCollection()

  checkmate::assert_logical(x = condition,
                            len = 1,
                            add = coll)

  checkmate::assert_character(x = true,
                              len = 1,
                              add = coll)

  checkmate::assert_character(x = false,
                              len = 1,
                              add = coll)

  checkmate::reportAssertions(coll)

  if (condition) true
  else false
}

this_p_value = 0.03
```

This is `r toggle_text(this_p_value <= 0.05, "", "not")` significant as p = `r this_p_value`.


```{r}
this_p_value = 0.07
```

This is `r toggle_text(this_p_value <= 0.05, "", "not")` significant as p = `r this_p_value`.

Upvotes: 1

beepingbopping
beepingbopping

Reputation: 180

So a solution I came up with while writing this question is:

``` {r}
this_p_value = .03

```

`r if(this_p_value<.05){paste(" this is significant as p=",this_p_value,". [Rest of writeup here]",sep='')} else {"this is not significant"}`

But any alternatives to using "paste"?

Upvotes: 0

Related Questions