CODEWITHSUNDEEP
rdockerrstudio
Alexander Borochkin
Alexander Borochkin

Reputation: 4611

Customizing RStudio environment in Docker container

I use RStudio in Docker container in Windows 10 Pro. I use RStudio rocker/rstudio image pulled from https://hub.docker.com/u/rocker/.

To start container I executed command:

docker run -d -p 8787:8787 -v //c/Users/<My name>/Documents/R/Rprojects:/home/rstudio/ rocker/rstudio

And then I can access the server from my browser by following link: http://localhost:8787/. Everything works fine.

What I want to do is some customization of the RStudio environment. In particular, I changed Tools/Global options/Editor theme to 'Pastel on Dark'. I applied this option but it persists only when the container alive. When I restart the container custom options are all gone.

My projects are saved in the folder that I indicated when running container, but global options are not.

So, how can I save also global options on my hard drive. Maybe I need to expose another folder on my drive which will connect to container folder where RStudio saves global options?

Is it possible to predefine global options in dockerfile as a new layer in docker image?

Upvotes: 10

Views: 2508

Answers (2)

asachet
asachet

Reputation: 6921

If, like me, you use an ephemeral container (using the --rm flag), then the container gets deleted when stopped. This is a good thing as it ensures a 100% clean environment every time but it means settings are not preserved from session to session.

Unlike many popular IDE, rstudio settings are not stored in a user-accessible transparent json, although they are working on it.

A workaround is copying over the settings to the right location:

  • keybindings: /home/rstudio/.R/rstudio/keybindings/rstudio_bindings.json
  • general settings (such as theme): /home/rstudio/.rstudio/monitored/user-settings

To set it up:

  1. Launch rstudio in a container
  2. Set your desired settings
  3. Back up the 2 files listed above somewhere on your host.
  4. Copy over the config files every time you start rstudio - see script below.

I have created a quick launch shortcut pointing to the following script which is easily adapted. It starts a container named rstudio and copies over the settings I have backed up (in my case from /home/asac/projects/rstudio-config)

#!/bin/bash                                     
                         
echo Running rstudio on localhost:8787                 
docker run -d --rm -p 8787:8787 -e PASSWORD=<pwd> \                       
-v /home/asac/projects:/home/rstudio/projects \                          
-v /home/asac/data:/home/rstudio/data \                                  
--name rstudio asachet/shiny-dev                                         
                                                                         
echo Copying over rstudio settings                                       
docker exec rstudio mkdir /home/rstudio/.R/rstudio/keybindings -p        
docker cp /home/asac/projects/rstudio-config/user-settings rstudio:/home/rstudio/.rstudio/monitored/user-settings
docker cp /home/asac/projects/rstudio-config/rstudio_bindings.json rstudio:/home/rstudio/.R/rstudio/keybindings/rstudio_bindings.json
                                                                         
echo Launching browser                                                   
xdg-open http://localhost:8787

NEW IN 2020

With RStudio v1.3, there is a new file ~/.config/rstudio/rstudio-prefs.json which controls all of the settings. You can copy it between machines or hand-edit it.

More details in the RStudio Server PR which got ported to RStudio in version 1.3.

Upvotes: 7

SarahGC
SarahGC

Reputation: 507

To clear up Alexander's comment on his own post:

  1. Run your container: docker run -p 8787:8787 -v /home/cummingssg/code:/home/rstudio/code rocker/verse
  2. Go to localhost and make changes in appearance of RStudio like usual
  3. Exit container: Using control-C or docker stop
  4. Find name of previous container: docker ps -a
  5. Restart container, and it will have the same appearance: docker start container_name*

(*whichever recent item of step 4 has image rocker/verse)

Thanks, Alexander

Upvotes: 1

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