CODEWITHSUNDEEP
hpcqsub
john23wenx
john23wenx

Reputation: 9

I cannot submit a job on HPC (QSUB)

for the past 2 months, I have been trying to find out why why I cannot submit a job on our HPC (using QSUB), recently, I found out that my home directory was

$/export/home/wrfuser

while my other co-workers are
$/home/wrfuser1

*note /export

I can submit a job but it never shows a result. Here's my sample hello.qsub:

#!/bin/bash --login
 #PBS -j oe
 #PBS -l walltime=00:01:00,nodes=1,ppn=1,mem=50mb

 export WORKDIR=/mnt/NFS003/WRF/WRF_hist/qsub_test

 cd ${WORKDIR}

 echo "HELLO WORLD"

[wrfuser@HPC qsub_test]$ vi hello.qsub

[wrfuser@HPC qsub_test]$ qsub hello.qsub

Your job 7618 ("hello.qsub") has been submitted

[wrfuser@HPC qsub_test]$ qstat

job-ID prior name user state submit/start at queue slots ja-task-ID

7617 0.55500 hello.qsub wrfuser Eqw 04/06/2018 10:21:35 1 7618 0.55500 hello.qsub wrfuser Eqw 04/06/2018 10:35:15 1

[wrfuser@HPC qsub_test]$

If its not possible to do that on /export/home, is there any other way to submit a job on HPC?

Upvotes: 0

Views: 643

Answers (1)

john23wenx
john23wenx

Reputation: 9

I solved it!!! I changed my qsub script to 

#!/bin/bash
#
#$ -cwd
#$ -j y
#$ -S /bin/bash
#$ -pe orte 64


echo "HELLO JOHN"
mkdir Hello_world
[wrfuser@CADHPC01 run]$

I am using number of nodes,ppn, and memory on my previous script and now I changed it to number of cores #$ -pe orte 64. However, I not 100% sure that it is the main reason for that error.

I am newbie here in stackoverflow and it feels like I will learn and enjoy exponentially here!! Thanks! :D

Upvotes: 1

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