CODEWITHSUNDEEP
pythonmacosdocopt
Grendel
Grendel

Reputation: 597

ModuleNotFoundError: No module named 'docopt'

I have installed docopt by typing pip3 install docopt and now it is well installed: You can see it on the list

umr5558-c02gl0y6drjm:Concatenate etudiant$ pip3 list
Package         Version
--------------- -------
biopython       1.71   
buildozer       0.34   
cycler          0.10.0 
docopt          0.6.2  
kiwisolver      1.0.1  
matplotlib      2.2.2  
nose            1.3.7  
numpy           1.14.2 
pexpect         4.5.0  
pip             10.0.0 
ptyprocess      0.5.2  
pyparsing       2.2.0  
python-dateutil 2.7.2  
pytz            2018.4 
scipy           1.0.1  
setuptools      39.0.1 
sh              1.12.14
six             1.11.0 
virtualenv      15.2.0 
wheel           0.30.0

But when I try to import docoport from docopt on python3 it raises:

ModuleNotFoundError: No module named 'docopt'

Does someone have an idea?

Here is the path:

umr5558-c02gl0y6drjm:Concatenate etudiant$ pip3.6 install docopt
Requirement already satisfied: docopt in /usr/local/lib/python3.6/site-packages (0.6.2)

Here is the import section: 

from Bio import codonalign 
from Bio.Align import MultipleSeqAlignment 
from Bio.SeqRecord import SeqRecord 
from Bio.Alphabet import IUPAC 
from Bio.Seq import Seq from Bio import AlignIO 
from Bio import pairwise2 
from Bio.codonalign.codonseq import _get_codon_list, CodonSeq, cal_dn_ds 
import scipy 
from Bio.Align.Applications import MuscleCommandline 
from Bio.Align import MultipleSeqAlignment 
from scipy.linalg import expm 
from Bio import SeqIO 
import sys 
import numpy as np 
from docopt import docopt

Thanks

Upvotes: 4

Views: 24177

Answers (2)

Kristin
Kristin

Reputation: 29

I had a similar problem and this is how I solved it:
I also had installed docopt via pip install docopt, and I have both python 2 and 3 in my mac.

The problem is that docopt is installed for python 3, but when running the .py file in terminal, it ran in python 2 by default.
Just add #!/usr/bin/env python3 to the very beginning of your .py file, and it should fix your issue.

Upvotes: 2

Sadjad Esfandiari
Sadjad Esfandiari

Reputation: 461

Hello Try it

sudo apt install python3-docopt

Upvotes: 2

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