CODEWITHSUNDEEP
r
Avinash
Avinash

Reputation: 1

About GEOquery package usage

I have just started using R. I was hoping to write a program to get dataset from NCBI/GEO and analyze the data to do comparative transcriptomics but couldn't get to make it work. I was wondering if someone has worked on GEO datasets and help with some sample program or guide me through usage of this package.

Thank you, Avinash

Upvotes: 0

Views: 1074

Answers (1)

mdsumner
mdsumner

Reputation: 29525

Start with the vignette for the package: http://www.bioconductor.org/packages/1.8/bioc/vignettes/GEOquery/inst/doc/GEOquery.pdf

Install the package based on bioconductor instructions:

http://www.bioconductor.org/help/bioc-views/release/bioc/html/GEOquery.html

Upvotes: 1

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