CODEWITHSUNDEEP
anacondapython-3.6importerrorcondalibstdc++
mflowww
mflowww

Reputation: 7465

ImportError: libstdc++.so.6: version `CXXABI_1.3.9' not found (required by...)

I installed a Python package (auto-sklearn) in my linux machine on AWS. The installation is shown successful, but when I try to use it in Python by calling "import autosklearn", I get the following ImportError:

ImportError: /home/myname/.conda/envs/myenv/lib/python3.6/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /home/myname/.conda/envs/myenv/lib/python3.6/site-packages/scipy/sparse/_sparsetools.cpython-36m-x86_64-linux-gnu.so)

I then searched online where I found this post. I tried their recommended methods to reset LD_LIBRARY_PATH=/usr/lib64/:$LD_LIBRARY_PATH export LD_LIBRARY_PATH

However it's not working.

I'm not sure if I did something wrong to reset LD_LIBRARY_PATH? Do I reset LD_LIBRARY_PATH in terminal?

How can I fix this issue in general? I already updated to Anaconda distribution 5 according this post, that should have included libstdc++.so.6: version `CXXABI_1.3.9' according to the author.

Thanks!

Python 3.6 Conda

Upvotes: 2

Views: 7506

Answers (2)

jyrhee
jyrhee

Reputation: 1

I had the same problem with HPC and solved it by loading gcc module as below:

module load compilers/gcc-9.2.

Hope it helps.

Upvotes: -1

Ramesh Kumar
Ramesh Kumar

Reputation: 1568

I was also facing same problem. I solved it by updating the scipy using pip install -U scipy

Upvotes: 4

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