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pythonemacsipythonjupyter-notebook
Curtis
Curtis

Reputation: 1265

Integrating jupyter notebook (ipython) into org-mode notebook

Is there a way I can link in jupyter notebooks (ipython) into the org-mode notebook? The same way other files (images) can be brought in? If it is possible will the outputs are also seen in the note (and inputs are runnable?), or only code itself? A dummy's guide would be a lot more appreciated as I'm new to emacs and configuring things are not straightforward. Many Thanks

Upvotes: 2

Views: 2072

Answers (1)

manandearth
manandearth

Reputation: 824

You can use ipython in an org babel code block.

1) start in a shell jupyter-console

2) copy the json filename from /run/user/1000/jupyter to :session argument in the source code header.

an example:

#+BEGIN_SRC ipython :session kernel-9735.json :exports both :results raw drawer

import matplotlib.pyplot as plt
plt.style.use('seaborn-whitegrid')
import numpy as np


fig = plt.figure()
ax = plt.axes()

x = np.linspace(0, 10, 1000)
ax.plot(x, np.sin(x));


#+END_SRC

for plot image output M-x org-display-inlineimages

prerequisites:

you will need to add ipython to your org-babel: (require 'ob-ipython)

(org-babel-do-load-languages
 'org-babel-load-languages
 '((python . t)
   (ipython . t)))

and generally:

(setq org-src-fontify-natively t
    org-src-preserve-indentation t
    org-src-tab-acts-natively t)

I found that ipython is no longer using readline so it causes some strange formatting, this is solved using:

(setq org-babel-python-command "/PATH/TO/FOO/BAR/BAZ/ipython3 --no-banner --classic --no-confirm-exit")

for inline images:

(add-hook 'org-babel-after-execute-hook 'org-display-inline-images 'append)

I recommend to check out scimax which is an Emacs starterkit for scientists and engineers. and ein which works a treat!

Upvotes: 4

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