CODEWITHSUNDEEP
ubuntumakefilecmakeshared-libraries
Ethunxxx
Ethunxxx

Reputation: 1337

Error while loading shared libraries: libhdf5.so.101: cannot open shared object file

I'm currently trying to install this GitHub library on a Ubuntu 18.04 machine and I followed all the installation steps stated on the Github page. However, when I try to call the function siemens_to_ismrmrd in the command line, I get the following error:

error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory

libhdf5 is installed on my machine, though. Typing locate libhdf5.so in the command line gives

/home/username/anaconda3/lib/libhdf5.so
/home/username/anaconda3/lib/libhdf5.so.101
/home/username/anaconda3/lib/libhdf5.so.101.0.0
/home/username/anaconda3/pkgs/hdf5-1.10.1-h9caa474_1/lib/libhdf5.so
/home/username/anaconda3/pkgs/hdf5-1.10.1-h9caa474_1/lib/libhdf5.so.101
/home/username/anaconda3/pkgs/hdf5-1.10.1-h9caa474_1/lib/libhdf5.so.101.0.0

In another question here on SO, it was suggested to run sudo ldconfig. This also didn't help in my case, the same error still pops up.

The command echo $LD_LIBRARY_PATH which is recommended to look at in other questions returns nothing.

How can I solve this issue?

Upvotes: 3

Views: 21080

Answers (2)

Rafael Beirigo
Rafael Beirigo

Reputation: 1792

This worked for me on Debian 10 (source):

sudo apt install pkg-config libhdf5-dev

Upvotes: 5

Ninad Madhab
Ninad Madhab

Reputation: 115

Try sudo apt install python3-h5py after reinstalling. Solved the error for me in linux-aarch64

Upvotes: 2

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