CODEWITHSUNDEEP
macosanacondajupyter-notebookrstudiohomebrew
hhh
hhh

Reputation: 52840

Kernel Error in R Jupyter Notebook due to Anaconda?

I need to bundle R scripts into some Notebook such as Jupyter Notebook. My OSX setup contains Homebrew, Rstudio and Anaconda. Next I try to get R in Jupyter Notebook working. I am getting the following error

FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/Cellar/r/3.3.3_1/R.framework/Resources/bin/R': '/usr/local/Cellar/r/3.3.3_1/R.framework/Resources/bin/R'

enter image description here

that shows that paths are somehow messed up. Also, the Jupyter Notebook shows Kernel Error in Red. The path /Users/hhh/anaconda3/envs/ is a Anaconda path so this must be an issue with Anaconda and Jupyter Notebook.

How to get R running in Jupyter Notebook under Conda? How to resolve the Kernel error?

Questions separated about potential Conflicts

  1. Potential conflicts due to Homebrew and Anaconda here.

Upvotes: 0

Views: 1791

Answers (1)

hhh
hhh

Reputation: 52840

Your conda manages your bindings to R. You need to install the IRkernel package via conda such that

$ conda install -c r r-irkernel

to resolve the error.

Upvotes: 1

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