Reputation: 139
based on some dummy data I created a histogram with desity plot
set.seed(1234)
wdata = data.frame(
sex = factor(rep(c("F", "M"), each=200)),
weight = c(rnorm(200, 55), rnorm(200, 58))
)
a <- ggplot(wdata, aes(x = weight))
a + geom_histogram(aes(y = ..density..,
# color = sex
),
colour="black",
fill="white",
position = "identity") +
geom_density(alpha = 0.2,
# aes(color = sex)
) +
scale_color_manual(values = c("#868686FF", "#EFC000FF"))
The histogram of weight
shall be colored corresponding to sex
, so I use aes(y = ..density.., color = sex)
for geom_histogram()
:
a + geom_histogram(aes(y = ..density..,
color = sex
),
colour="black",
fill="white",
position = "identity") +
geom_density(alpha = 0.2,
# aes(color = sex)
) +
scale_color_manual(values = c("#868686FF", "#EFC000FF"))
As I want it to, the density plot stays the same (overall for both groups), but the histograms jump scale up (and seem to be treated individually now):
How do I prevent this from happening? I need individually colored histogram bars but a joint density plot for all coloring groups.
P.S.
Using aes(color = sex)
for geom_density()
gets everything back to original scales - but I don't want individual density plots (like below):
a + geom_histogram(aes(y = ..density..,
color = sex
),
colour="black",
fill="white",
position = "identity") +
geom_density(alpha = 0.2,
aes(color = sex)
) +
scale_color_manual(values = c("#868686FF", "#EFC000FF"))
EDIT:
As it has been suggested, dividing by the number of groups in geom_histogram()
's aesthetics with y = ..density../2
may approximate the solution. Nevertheless, this only works with symmetric distributions like in the first output below:
a + geom_histogram(aes(y = ..density../2,
color = sex
),
colour="black",
fill="white",
position = "identity") +
geom_density(alpha = 0.2,
) +
scale_color_manual(values = c("#868686FF", "#EFC000FF"))
which yields
Less symmetric distributions, however, may cause trouble using this approach. See those below, where for 5 groups, y = ..density../5
was used. First original, then manipulation (with position = "stack"
):
Since the distribution is heavy on the left, dividing by 5 underestimates on the left and overestimates on the right.
EDIT 2: SOLUTION
As suggested by Andrew, the below (complete) code solves the problem:
library(ggplot2)
set.seed(1234)
wdata = data.frame(
sex = factor(rep(c("F", "M"), each = 200)),
weight = c(rnorm(200, 55), rnorm(200, 58))
)
binwidth <- 0.25
a <- ggplot(wdata,
aes(x = weight,
# Pass binwidth to aes() so it will be found in
# geom_histogram()'s aes() later
binwidth = binwidth))
# Basic plot w/o colouring according to 'sex'
a + geom_histogram(aes(y = ..density..),
binwidth = binwidth,
colour = "black",
fill = "white",
position = "stack") +
geom_density(alpha = 0.2) +
scale_color_manual(values = c("#868686FF", "#EFC000FF")) +
# Use fixed scale for sake of comparability
scale_x_continuous(limits = c(52, 61)) +
scale_y_continuous(limits = c(0, 0.25))
# Plot w/ colouring according to 'sex'
a + geom_histogram(aes(x = weight,
# binwidth will only be found if passed to
# ggplot()'s aes() (as above)
y = ..count.. / (sum(..count..) * binwidth),
color = sex),
binwidth = binwidth,
fill="white",
position = "stack") +
geom_density(alpha = 0.2) +
scale_color_manual(values = c("#868686FF", "#EFC000FF")) +
# Use fixed scale for sake of comparability
scale_x_continuous(limits = c(52, 61)) +
scale_y_continuous(limits = c(0, 0.25)) +
guides(color = FALSE)
Note:
binwidth = binwidth
needed to be passed to ggplot()
's aes()
, otherwise the pre-specified binwidth
would not be found by geom_histogram()
's aes()
. Further, position = "stack"
is specified, so that both versions of the histogram are comparable. Plots for dummy data and the more complex distribution below:
Solved - Thanks for your help!
Upvotes: 3
Views: 711
Reputation: 18425
I don't think you can do it using y=..density..
, but you can recreate the same thing like this...
binwidth <- 0.25 #easiest to set this manually so that you know what it is
a + geom_histogram(aes(y = ..count.. / (sum(..count..) * binwidth),
color = sex),
binwidth = binwidth,
fill="white",
position = "identity") +
geom_density(alpha = 0.2) +
scale_color_manual(values = c("#868686FF", "#EFC000FF"))
Upvotes: 1