CODEWITHSUNDEEP
scalamavenapache-sparkrddscalatest
Harelz
Harelz

Reputation: 162

Tests fail on a simple RDD action

I am currently trying to package my project using maven, however, maven tests fail (throws an exception) on a simple RDD action.

I am using Spark 2.3.0, Scala 2.11.8, JDK 8.

The code:

class A extends FunSuite with DataFrameSuiteBase with Matchers with Logging
                                          with BeforeAndAfter with MockFactory {
    val myList= List(
        Array(22, 34, 56, 785),
        Array(21,24,34,534,563),
        Array(2, 34, 86,345),
        Array(10, 34, 98),
        Array(101, 456, 545,678,763),
        Array(1, 3, 5,23),
        Array(32, 322, 523,623),
        Array(11, 22, 58,223),
        Array(14, 545),
        Array(22)
    )
    val myRDD: RDD[Array[Int]] = sc.parallelize(myList)

    test("rddTest"){
       val byValueCount = myRDD.flatMap(x => x).countByValue() //doesn't work
       val rddCount = myRDD.count() //works
    ...}}

The second count is working fine, but the first count (by value) throws this exception:

- rddTest *** FAILED ***
  java.lang.IllegalArgumentException:
  at org.apache.xbean.asm5.ClassReader.<init>(Unknown Source)
  at org.apache.xbean.asm5.ClassReader.<init>(Unknown Source)
  at org.apache.xbean.asm5.ClassReader.<init>(Unknown Source)
  at org.apache.spark.util.ClosureCleaner$.getClassReader(ClosureCleaner.scala:46)
  at org.apache.spark.util.FieldAccessFinder$$anon$3$$anonfun$visitMethodInsn$2.apply(ClosureCleaner.scala:449)
  at org.apache.spark.util.FieldAccessFinder$$anon$3$$anonfun$visitMethodInsn$2.apply(ClosureCleaner.scala:432)
  at scala.collection.TraversableLike$WithFilter$$anonfun$foreach$1.apply(TraversableLike.scala:733)
  at scala.collection.mutable.HashMap$$anon$1$$anonfun$foreach$2.apply(HashMap.scala:103)
  at scala.collection.mutable.HashMap$$anon$1$$anonfun$foreach$2.apply(HashMap.scala:103)
  at scala.collection.mutable.HashTable$class.foreachEntry(HashTable.scala:230)
  at scala.collection.mutable.HashMap.foreachEntry(HashMap.scala:40)
  at scala.collection.mutable.HashMap$$anon$1.foreach(HashMap.scala:103)
  at scala.collection.TraversableLike$WithFilter.foreach(TraversableLike.scala:732)
  at org.apache.spark.util.FieldAccessFinder$$anon$3.visitMethodInsn(ClosureCleaner.scala:432)
  at org.apache.xbean.asm5.ClassReader.a(Unknown Source)
  at org.apache.xbean.asm5.ClassReader.b(Unknown Source)
  at org.apache.xbean.asm5.ClassReader.accept(Unknown Source)
  at org.apache.xbean.asm5.ClassReader.accept(Unknown Source)
  at org.apache.spark.util.ClosureCleaner$$anonfun$org$apache$spark$util$ClosureCleaner$$clean$14.apply(ClosureCleaner.scala:262)
  at org.apache.spark.util.ClosureCleaner$$anonfun$org$apache$spark$util$ClosureCleaner$$clean$14.apply(ClosureCleaner.scala:261)
  at scala.collection.immutable.List.foreach(List.scala:381)
  at org.apache.spark.util.ClosureCleaner$.org$apache$spark$util$ClosureCleaner$$clean(ClosureCleaner.scala:261)
  at org.apache.spark.util.ClosureCleaner$.clean(ClosureCleaner.scala:159)
  at org.apache.spark.SparkContext.clean(SparkContext.scala:2292)
  at org.apache.spark.SparkContext.runJob(SparkContext.scala:2066)
  at org.apache.spark.SparkContext.runJob(SparkContext.scala:2092)
  at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:939)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
  at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
  at org.apache.spark.rdd.RDD.collect(RDD.scala:938)
  at org.apache.spark.rdd.PairRDDFunctions$$anonfun$countByKey$1.apply(PairRDDFunctions.scala:370)
  at org.apache.spark.rdd.PairRDDFunctions$$anonfun$countByKey$1.apply(PairRDDFunctions.scala:370)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
  at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
  at org.apache.spark.rdd.PairRDDFunctions.countByKey(PairRDDFunctions.scala:369)
  at org.apache.spark.rdd.RDD$$anonfun$countByValue$1.apply(RDD.scala:1208)
  at org.apache.spark.rdd.RDD$$anonfun$countByValue$1.apply(RDD.scala:1208)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
  at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
  at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
  at org.apache.spark.rdd.RDD.countByValue(RDD.scala:1207)

The tests are just fine using the IDE (intelliJ).

EDIT: FULLL POM:

<?xml version='1.0' encoding='UTF-8'?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0">
    <modelVersion>4.0.0</modelVersion>
    <groupId>project</groupId>
    <artifactId>project_2.11</artifactId>
    <packaging>jar</packaging>
    <description>project</description>
    <version>0.0.1-SNAPSHOT</version>
    <name>project</name>
    <organization>
        <name>project</name>
    </organization>

    <properties>
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
        <scala.version>2.11.8</scala.version>
        <scala.compat.version>2.11</scala.compat.version>
        <spark.cdh.version>${spark.version}.cloudera1</spark.cdh.version>
        <mockito.version>1.9.5</mockito.version>
        <spark.version>2.3.0</spark.version>
        <java.version>1.8</java.version>
    </properties>

    <!-- repository to add org.apache.spark -->
    <repositories>
        <repository>
            <id>cloudera-repo-releases</id>
            <url>https://repository.cloudera.com/artifactory/repo/</url>
        </repository>
    </repositories>

    <build>
        <sourceDirectory>src/main/scala-2.10</sourceDirectory>
        <testSourceDirectory>src/test/scala</testSourceDirectory>
        <resources>
            <!-- regular resource processsing for everything except logback.xml -->
            <resource>
                <directory>src/main/resources</directory>
            </resource>
        </resources>

        <plugins>
            <plugin>
                <groupId>org.scala-tools</groupId>
                <artifactId>maven-scala-plugin</artifactId>
                <version>2.15.2</version>
                <executions>
                    <execution>
                        <id>compile</id>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                        <phase>compile</phase>
                    </execution>
                    <execution>
                        <id>test-compile</id>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                        <phase>test-compile</phase>
                    </execution>
                    <execution>
                        <id>process-test</id>
                        <phase>process-test-resources</phase>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>process</id>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.7</version>
                <configuration>
                    <skipTests>true</skipTests>
                    <trimStackTrace>false</trimStackTrace>
                </configuration>
            </plugin>
            <!-- enable scalatest -->
            <plugin>
                <groupId>org.scalatest</groupId>
                <artifactId>scalatest-maven-plugin</artifactId>
                <version>1.0</version>
                <configuration>
                    <parallel>false</parallel>
                    <reportsDirectory>${project.build.directory}/surefire-reports</reportsDirectory>
                    <junitxml>.</junitxml>
                    <filereports>WDF TestSuite.txt</filereports>
                    <htmlreporters>${project.build.directory}/html/scalatest</htmlreporters>
                    <testFailureIgnore>false</testFailureIgnore>
                    <!--<argLine>-Xmx2048m</argLine>-->
                    <argLine>-Xmx2048m -Dsun.io.serialization.extendedDebugInfo=true</argLine>
                    <stdout>F</stdout>
                </configuration>
                <executions>
                    <execution>
                        <id>test</id>
                        <goals>
                            <goal>test</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <version>2.4.3</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                        <configuration>
                            <filters>
                                <filter>
                                    <artifact>*:*</artifact>
                                    <excludes>
                                        <exclude>META-INF/*.SF</exclude>
                                        <exclude>META-INF/*.DSA</exclude>
                                        <exclude>META-INF/*.RSA</exclude>
                                    </excludes>
                                </filter>
                            </filters>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
    <dependencies>
        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-library</artifactId>
            <version>2.11.8</version>
        </dependency>
        <dependency>
            <groupId>org.pegdown</groupId>
            <artifactId>pegdown</artifactId>
            <version>1.4.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>project-utils</groupId>
            <artifactId>project-utils_2.11</artifactId>
            <version>0.0.1-SNAPSHOT</version>
            <type>test-jar</type>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>project-common</groupId>
            <artifactId>project-common_2.11</artifactId>
            <version>0.0.1-SNAPSHOT</version>
        </dependency>
        <dependency>
            <groupId>org.scoverage</groupId>
            <artifactId>scalac-scoverage-runtime_2.11</artifactId>
            <version>1.1.0</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.scoverage</groupId>
            <artifactId>scalac-scoverage-plugin_2.11</artifactId>
            <version>1.1.0</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-core_2.11</artifactId>
            <version>${spark.version}</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-mllib_2.11</artifactId>
            <version>${spark.version}</version>
            <!--<scope>runtime</scope>-->
        </dependency>
        <dependency>
            <groupId>com.holdenkarau</groupId>
            <artifactId>spark-testing-base_2.11</artifactId>
            <version>${spark.version}_0.9.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-csv</artifactId>
            <version>1.4</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-sql_2.11</artifactId>
            <version>${spark.version}</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.scalaz</groupId>
            <artifactId>scalaz-core_2.11</artifactId>
            <version>7.2.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-hive_2.11</artifactId>
            <version>${spark.version}</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest_2.11</artifactId>
            <version>3.0.5</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scalamock</groupId>
            <artifactId>scalamock_2.11</artifactId>
            <version>4.1.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scalamock</groupId>
            <artifactId>scalamock-scalatest-support_2.11</artifactId>
            <version>3.6.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-all</artifactId>
            <version>1.9.5</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.github.fommil.netlib</groupId>
            <artifactId>all</artifactId>
            <version>1.1.2</version>
            <type>pom</type>
        </dependency>
    </dependencies>
</project>

The answers online are for those who use Java 9+ - I'm using Java 8. The previous solutions were on this: java.lang.IllegalArgumentException at org.apache.xbean.asm5.ClassReader.<init>(Unknown Source) with Java 10

However, it's not a solution for my case. Also, this is a very focused problem and by no means a duplicate.

Thank you very much!

Upvotes: 2

Views: 278

Answers (2)

Harelz
Harelz

Reputation: 162

So the problem was conflicting dependencies as ALincoln suspected. Some other modules in the same project (even though they are not related) had conflicts with this one. Apparently the root pom made a connection with unrelated modules and the final result was this error. Thank you, everyone!

Upvotes: 0

ALincoln
ALincoln

Reputation: 451

Your code works just fine on my machine (Spark 2.3.0 or Spark 2.3.1). I think it is some mess with dependencies. Please provide full pom.xml.

Upvotes: 1

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