CODEWITHSUNDEEP
pythonpytorchtorch
mining
mining

Reputation: 3709

How to compute pairwise distance between point set and lines in PyTorch?

The point set A is a Nx3 matrix, and from two point sets B and C with the same size of Mx3 we could get the lines BC betwen them. Now I want to compute the distance from each point in A to each line in BC. B is Mx3 and C is Mx3, then the lines are from the points with correspoinding rows, so BC is a Mx3 matrix. The basic method is computed as follows:

D = torch.zeros((N, M), dtype=torch.float32)
for i in range(N):
    p = A[i]  # 1x3
    for j in range(M):
        p1 = B[j] # 1x3
        p2 = C[j] # 1x3
        D[i,j] = torch.norm(torch.cross(p1 - p2, p - p1)) / torch.norm(p1 - p2)

Are there any faster method to do this work? Thanks.

Upvotes: 2

Views: 1511

Answers (1)

Berriel
Berriel

Reputation: 13641

You can remove the for loops by doing this (it should speed-up at the cost of memory, unless M and N are small):

diff_B_C = B - C
diff_A_C = A[:, None] - C
norm_lines = torch.norm(diff_B_C, dim=-1)
cross_result = torch.cross(diff_B_C[None, :].expand(N, -1, -1), diff_A_C, dim=-1)
norm_cross = torch.norm(cross_result, dim=-1)
D = norm_cross / norm_lines

Of course, you don't need to do it step-by-step. I just tried to be clear with the variable names.

Note: if you don't provide dim to torch.cross, it will use the first dim=3 which would give the wrong results if N=3 (from the docs):

If dim is not given, it defaults to the first dimension found with the size 3.

If you are wondering, you can check here why I chose expand instead of repeat.

Upvotes: 4

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