Reputation: 73
I want to run the tool ChromHMM locally, which opens a web browser after finishing the calculations. The tool uses
java.awt.Desktop.getDesktop().browse((new File(...)).toURI())
and it doesn't have a parameter to prevent that behavior.
Upvotes: 1
Views: 259
Reputation: 817
On ChromeHMM GitHub account there is a relevant issue from 2017 that lists several solutions:
This:
unset DISPLAY && java -mx1600M -jar $chromhmm LearnModel -s 1 -p $threads -nobrowser $binariesdir $modelsdir $num_states $assembly
Or specifying -Djava.awt.headless=true
java -Djava.awt.headless=true -jar ChromHMM.jar LearnModel -nobrowser <inputdir> <outputdir> <numstates> <assembly>
Weirdly, I found also this comment:
The '-nobrowser' flag skips the launching of the web browser but not the generation of emission parameters images.
Upvotes: 2
Reputation: 817
EDIT: The OP pointed out that this solution is wrong, I am leaving it for reference:
-nobrowser doesn't produce browser files. A bit confusing, but it has nothing to to with opening a webbrowser after finishing the calculations
There is a -nobrowser
option, as documented in the ChromHMM User Manual
.
-nobrowser – If this flag is present, then browser files are not printed. If -nobed is requested then browserfile writing is also suppressed.
So the command would be:
java -jar ChromHMM.jar LearnModel -nobrowser <inputdir> <outputdir> <numstates> <assembly>
Upvotes: 0
Reputation: 1406
You could remove the default browser setting from the registry.
HKEY_CURRENT_USER\SOFTWARE\Microsoft\Windows\Shell\Associations\URLAssociations\(http|https)\UserChoice
Upvotes: -1