CODEWITHSUNDEEP
duplicatestagssequence-alignmentsamtools
Fabiana Gambaro
Fabiana Gambaro

Reputation: 1

SAM (Sequence Alignment/Map) Format Alignment Tags

I am using samtools to remove duplicates. To mark and then remove duplicates markdup relies on ms (mate score) and MC (mate cigar) tags that fixmates provides.

Does anyone knows exactly what are these tags? How is fixmates doing?

Upvotes: 0

Views: 166

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