CODEWITHSUNDEEP
rhierarchical-clusteringpheatmapheatmaply
Arturo
Arturo

Reputation: 354

Clustering in pheatmap and heatmaply R packages

I am using the R heatmaply package to produce interactive heatmaps. I like the software, but I would like to get from it the same clustering (ordering of rows and columns) I get using the pheatmap package. Therefore, I would like the two commands to produce the same ouput:

heatmaply (scale (mtcars))
pheatmap  (scale (mtcars))

Is there a way to do this? Thanks in advance. Arturo

P.S. I recently asked another similar question about the color output, i.e., not clustering, output, that was brilliantly answered here: R heatmaply and pheatmap output

Upvotes: 0

Views: 745

Answers (1)

Marco Sandri
Marco Sandri

Reputation: 24272

Here is a solution to order columns and rows of heatmaply as in pheatmap:

phtmap <- pheatmap(scale(mtcars))
heatmaply(scale(mtcars), Rowv=phtmap[[1]], Colv=phtmap[[2]], revC=TRUE)

The ouput of pheatmap enter image description here

and the output of heatmaply enter image description here

Upvotes: 0

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