CODEWITHSUNDEEP
pythonoperating-systemos.walkimage-loadingloadimage
user14105291
user14105291

Reputation: 11

Load medical images from subfolders

i try to work with chest x-ray images data from stanford ml group. However, in order to train my data i need to load images from subfolders:

chestXray/train/#patiendIDs-here/#studyIDs-here/view-jpeg-files.jpg

i tried different ways with os.walk:

root='/content'
exclude_files = ''
#exclude_files = read_file.read() csv
samples=[]
samples2=[]



for rt, dirs, files in os.walk(os.path.join(root, 'cHexpert','train')):
    for name in dirs:
        name = os.path.join(root, 'cHexpert/train', name)
        #print(files)
        if name not in exclude_files:
            samples.append(name)

    for file in files:
        file = os.path.join(root, 'cHexpert/train' ,file )
        #print(files)
        if name not in exclude_files:
            samples2.append(file)

but the first one gave me these paths:

/content/cHexpert/train/patient00006

and after a while: /content/cHexpert/train/study2

second pile of code gave this which looks more true but it miss some subdictioneries:

/content/cHexpert/train/view1_frontal.jpg

how to concenate them? thanks in advance

Upvotes: 1

Views: 46

Answers (0)

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