CODEWITHSUNDEEP
rforeach
user741819
user741819

Reputation: 161

How to specify the location of R packages in foreach( ... , .packages="pkg") %dopar%

My "pkg" was installed somewhere else, how could I tell foreach where to find the package?

foreach(i = 1:2,.packages="pkg") %dopar% { ... }

This give me error message:

worker initialization failed: there is no package called 'pkg'

Thank you for your help.

Upvotes: 3

Views: 2672

Answers (3)

Fraca
Fraca

Reputation: 21

you can specify the libPaths inside the function

foreach(i = 1:2) %dopar% { .libPaths("your_location_to_pkg") library("pkg") ... }

Upvotes: 0

Boern
Boern

Reputation: 7762

Another approach would be to distribute the .libPaths to all workers before you call foreach:

library(foreach)
library(doParallel)

#setup parallel backend to use 8 processors
cl<-makeCluster(8)
registerDoParallel(cl)

# pass libPath to workers, NOTE THIS LINE
clusterCall(cl, function(x) .libPaths(x), .libPaths())

parallelResults <- foreach(i = 1:42, .combine = rbind) %dopar% {
    # do your stuff
}

Upvotes: 9

Dirk is no longer here
Dirk is no longer here

Reputation: 368539

You could use the .libPaths() function to set a library path in a running session.

Otherwise the startup files such as ~/.Renviron can help, see the ?Startup.

Lastly, if you use foreach to run of different machines, you need to take care of the library path on each of the machines.

Upvotes: 3

Related Questions