Reputation: 2126
I have a question concerning 2D interpolation of non-equally spaced values in R. I was able to do a 2D linear interpolation with equally-spaced values using the interp2()
from the pracma
package (see example below).
Equally-spaced 2D linear interpolation
library(dplyr)
library(tidyr)
### 2D interpolation with equally-spaced values ###
# Create sample data
data <- expand_grid(val1 = c(seq(1, 5, 1)), val2 = seq(1, 5, 1))
df <- data %>% mutate(z = val1 *val2)
# Transform into matrix
mat <- reshape2::acast(df, val1~val2, value.var="z" )
mat
#> 1 2 3 4 5
#> 1 1 2 3 4 5
#> 2 2 4 6 8 10
#> 3 3 6 9 12 15
#> 4 4 8 12 16 20
#> 5 5 10 15 20 25
# Show plot
lattice::levelplot(mat)
# Create vectors containing coordinates for interpolation
interp_coords <- expand_grid(val1 = seq(1, 5, 0.1), val2 = seq(1, 5, 0.1))
# Interpolate using the interp() from the pracma library
interp_vals <- pracma::interp2(y = c(seq(1, 5, 1)), x = seq(1, 5, 1), Z = mat, xp = interp_coords$val1, yp = interp_coords$val2)
# Bind in new df, convert to matrix and plot
df_2 <- cbind(interp_coords, interp_vals)
mat2 <- reshape2::acast(df_2, val1~val2, value.var="interp_vals" )
lattice::levelplot(mat2)
Non-equally spaced 2D linear interpolation
Next, I tried to accomplish the same with a non-equally-spaced dataset (see image below; c(seq(1, 5, 1), seq(6, 10, 2)
).
### 2D interpolation with NON-equally spaced values ###
# Create sample data
df <- expand_grid(val1 = c(seq(1, 5, 1), seq(6, 10, 2)), val2 = seq(1, 5, 1)) %>%
mutate(z = val1 *val2)
# Transform into matrix
mat <- reshape2::acast(df, val1~val2, value.var="z" )
mat
#> 1 2 3 4 5
#> 1 1 2 3 4 5
#> 2 2 4 6 8 10
#> 3 3 6 9 12 15
#> 4 4 8 12 16 20
#> 5 5 10 15 20 25
#> 6 6 12 18 24 30
#> 8 8 16 24 32 40
#> 10 10 20 30 40 50
# Show plot
lattice::levelplot(mat)
Apparently, something goes wrong with the interpolation, and I do not understand what it is.
# Create vectors containing coordinates for interpolation
interp_coords <- expand_grid(val1 = seq(1, 10, 0.1), val2 = seq(1, 5, 0.1))
# Interpolate using the interp() from the pracma library
interp_vals <- pracma::interp2(y = c(seq(1, 5, 1), seq(6, 10, 2)), x = seq(1, 5, 1), Z = mat, xp = interp_coords$val1, yp = interp_coords$val2)
# Bind in new df, convert to matrix and plot
df_2 <- cbind(interp_coords, interp_vals)
mat2 <- reshape2::acast(df_2, val1~val2, value.var="interp_vals" )
lattice::levelplot(mat2)
Question
How can I perform a non-equally spaced 2D linear interpolation in R?
Created on 2020-10-30 by the reprex package (v0.3.0)
Upvotes: 1
Views: 740
Reputation: 173803
You have simply mixed up the xp
and yp
arguments of interp2
:
# Create vectors containing coordinates for interpolation
interp_coords <- expand_grid(val1 = seq(1, 10, 0.1), val2 = seq(1, 5, 0.1))
# Interpolate using the interp() from the pracma library
interp_vals <- pracma::interp2(y = c(seq(1, 5, 1), seq(6, 10, 2)),
x = seq(1, 5, 1), Z = mat,
xp = interp_coords$val2,
yp = interp_coords$val1)
# Bind in new df, convert to matrix and plot
df_2 <- cbind(interp_coords, interp_vals)
mat2 <- reshape2::acast(df_2, val1~val2, value.var="interp_vals" )
lattice::levelplot(mat2)
Upvotes: 2