CODEWITHSUNDEEP
pythonanacondacondabioinformatics
Lucija
Lucija

Reputation: 1

Unable to install pal2nal package in anaconda

I am new here and also just learning how to work in anaconda, so I would like to ask for help. I need some packages installed to be able to run my sequence analysis and calculate dN/dS ratio. For that I need paml, clustal omega, prank, blast and pal2nal packages to be installed. I'm working in Windows 10 (unfortunately, but no other way - working laptop).

I have been trying to install pal2nal package in anaconda using conda, bioconda, pip commands and I always get the same error.

My tries: conda install -c bioconda pal2nal, conda install -c anaconda pal2nal, conda install pal2nal, pip install pal2nal (it doesn't exist among python packages) and I even tried to create a new environment and install it there but no luck. It's the same with the rest of the packages.

The message what I always get is: Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: / Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError:

Does anyone know why I always get this error and maybe what to do to be able to install these packages?

Thank you very much for help!!

Upvotes: 0

Views: 173

Answers (1)

merv
merv

Reputation: 76780

Sorry, but that package is only available through Bioconda and Bioconda does not support Windows natively.

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Instead, you will need to work with a virtualization or containerization layer such as WSL or Docker/Singularity.

Upvotes: 0

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