CODEWITHSUNDEEP
rerror-handlingcorrelation
Anna
Anna

Reputation: 1

How can I interpret the meaning of this error when trying to compute a correlation matrix?

I have been trying to make what I thought should be a simple correlation matrix. I have the following data:

cormetric2 <- structure(list(rich = c(24.03017241, 22.3), spatial = c(20.16163793,  18.71), abund = c(13.69612069, 12.71),
               rare = c(12.14439655,  11.27), div = c(8.265086207, 7.67), nature = c(8.006465517, 7.43 ),
               other = c(7.747844828, 7.19), endem = c(3.362068966, 3.12), agm = c(2.068965517, 1.92),
               umbsp = c(0.517241379, 0.48)), class = "data.frame", row.names = c("GlobalOld",  "GlobalNew"))

I have used the following code:

corrplot(cormetric2, type = "upper", order = "hclust", 
         tl.col = "black", tl.srt = 45)

corrplot(cormetric2, type="upper")

Both returned the following error message:

Error in if (any(corr < cl.lim[1]) || any(corr > cl.lim[2])) { : missing value where TRUE/FALSE needed

What is the meaning of this error message? I do not have any zeros in my dataset, which looks like this:

head(cormetric2)
          rich  spatial    abund    rare      div   nature    other    endem      agm     umbsp
GlobalOld: 24.03017 20.16164 13.69612 12.1444 8.265086 8.006466 7.747845 3.362069 2.068966 0.5172414
GlobalNew: 22.30000 18.71000 12.71000 11.2700 7.670000 7.430000 7.190000 3.120000 1.920000 0.4800000

How can I create the correlation plot?

Upvotes: 0

Views: 719

Answers (1)

akrun
akrun

Reputation: 886938

By default, the corrplot, checks the corr object as a correlation matrix. Based on the input, it is not a correlation matrix or even a matrix. It is a data.frame. We could convert to matrix with as.matrix and specify is.corr = FALSE based on the documentation of ?corrplot

corr - The correlation matrix to visualize, must be square if order is not "original". For general matrix, please using is.corr = FALSE to convert.

library(corrplot)
corrplot(as.matrix(cormetric2), is.corr = FALSE, type = "upper")

-output

enter image description here

data

cormetric2 <- structure(list(rich = c(24.03017241, 22.3),
 spatial = c(20.16163793, 
18.71), abund = c(13.69612069, 12.71), rare = c(12.14439655, 
11.27), div = c(8.265086207, 7.67), nature = c(8.006465517, 7.43
), other = c(7.747844828, 7.19), endem = c(3.362068966, 3.12), 
    agm = c(2.068965517, 1.92), umbsp = c(0.517241379, 0.48)), 
    class = "data.frame", row.names = c("GlobalOld", 
"GlobalNew"))

Upvotes: 3

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