CODEWITHSUNDEEP
pythonubuntuanacondaconda
user15501559
user15501559

Reputation:

conda install -c bioconda simlord | UnsatisfiedError

Following this tutorial and two installation steps, I want to run SimLoRD.

On Ubuntu 18.04, using a Python 3.9 venv:

conda install -c bioconda simlord
UnsatisfiedError

Terminal output

I have tried this on Windows and Linux with different versions of Anaconda and Python without luck.

Suggested pip install simlord==1.0.4 via. Windows 10:

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

Windows pip install error

Upvotes: 0

Views: 137

Answers (3)

merv
merv

Reputation: 76800

Try creating a new environment. Something like

conda create -n simlord -c conda-forge -c bioconda -c defaults simlord

Note the three channels here is the recommended channel priority for Bioconda-based installations.

Upvotes: 0

user15501559
user15501559

Reputation:

Solution at BioStars. TLDR; Python 3.6.5 is the most recent stable version for installing and running SimLoRD

Upvotes: 1

astrochun
astrochun

Reputation: 1796

I'm not sure if this will entirely work for your setup as I don't know what your full analysis workflow is and what other dependencies you have, but you can install simlord via pip:

(py39) dbell30@dbell30-VirtualBox:~$ pip install simlord==1.0.4

If it is successful, check the output of pip list

Upvotes: 0

Related Questions