CODEWITHSUNDEEP
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Aidan Finnegan
Aidan Finnegan

Reputation: 1

Unable to knit R markdown

The following error is shown when I try to knit my r markdown baring in mind all code runs successfully otherwise.

Error in as.ts(x) : object 'Trainingdatar2000_m' not found
Calls: <Anonymous> ... withVisible -> eval -> eval -> acf -> na.action -> as.ts
In addition: Warning messages:
1: In has_crop_tools() : 
Tool(s) not installed or not in PATH: pdfcrop, ghostcript
-> As a result, figure cropping will be disabled.
2: In has_crop_tools() : 
Tool(s) not installed or not in PATH: pdfcrop, ghostcript
-> As a result, figure cropping will be disabled.
Execution halted```

Upvotes: 0

Views: 85

Answers (1)

CSJCampbell
CSJCampbell

Reputation: 2115

R Markdown evaluates in its own clean session. Your notebook needs to generate all datasets needed, and will not share objects in the parent session.

Upvotes: 1

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