CODEWITHSUNDEEP
amazon-web-servicesjupyter-notebookamazon-sagemakeryum
Kelly
Kelly

Reputation: 53

Lifetime cycle config is longer than 5 minutes, nohup command not working

I am trying to install a number of dependencies for my jupyter notebook, but would like them to be permanent to save me 20 minutes every time I restart the notebook. I have opted for using a lifecycle configuration, however, my script takes longer than 5 minutes to run. I found this article (https://aws.amazon.com/premiumsupport/knowledge-center/sagemaker-lifecycle-script-timeout/) to help resolve this problem, however, my notebook is still failing to start with the following error:

Notebook Instance Lifecycle Config 'arn:aws:sagemaker:eu-west-2:347285168835:notebook-instance-lifecycle-config/nbs-aap-dev-dsar' for Notebook Instance 'arn:aws:sagemaker:eu-west-2:347285168835:notebook-instance/nbs-aap-dev-dsar' took longer than 5 minutes. Please check your CloudWatch logs for more details if your Notebook Instance has Internet access.

Here is the script I am trying to run:

sudo nohup yum install wget &
sudo yum install autoconf &
sudo yum install automake &
sudo yum install libtool &
sudo yum install jpeg &
sudo yum install tiff &
sudo yum install libpng &
sudo yum install tiff2png &
sudo yum install libtiff &
sudo yum install autoconf aclocal automake &
sudo yum install libtool &
sudo yum -y install libjpeg-devel libpng-devel libpng-devel libtiff-devel zlib-devel &
sudo yum install gcc gcc-c++ make &
sudo wget https://github.com/DanBloomberg/leptonica/releases/download/1.82.0/leptonica-1.82.0.tar.gz &
sudo tar xzvf leptonica-1.82.0.tar.gz &
cd leptonica-1.82.0 &
sudo ./configure --prefix=/usr/local/ &
sudo make &
sudo make install &
sudo wget https://codeload.github.com/tesseract-ocr/tesseract/tar.gz/4.1.1 &
sudo tar -zxvf 4.1.1 &
cd tesseract-4.1.1 &
sudo ./autogen.sh &
sudo cp /home/ec2-user/leptonica-1.82.0/lept.pc /usr/lib64/pkgconfig/. &
sudo LIBLEPT_HEADERSDIR=/usr/local/lib ./configure --prefix=/usr/local/ --with-extra-libraries=/usr/local/lib &
sudo make &
sudo make install &
export LD_LIBRARY_PATH=/usr/local/lib &
sudo ldconfig &
sudo wget https://github.com/tesseract-ocr/tessdata_best/raw/main/eng.traineddata &
sudo mv -v eng.traineddata /usr/local/share/tessdata/eng.traineddata &
sudo wget https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs9550/ghostpdl-9.55.0.tar.gz &
sudo tar -zxvf ghostpdl-9.55.0.tar.gz &
cd ghostpdl-9.55.0 &
sudo ./configure --prefix=/usr/local/ &
sudo make &
sudo make install &
sudo yum -y install poppler-utils &
sudo wget https://github.com/qpdf/qpdf/releases/download/release-qpdf-10.1.0/qpdf-10.1.0.tar.gz &
sudo tar xzvf qpdf-10.1.0.tar.gz &
cd qpdf-10.1.0 &
sudo ./configure --prefix=/usr/local/ &
sudo make &
sudo make install

Upvotes: 3

Views: 1743

Answers (1)

Romeo Ninov
Romeo Ninov

Reputation: 7235

You do not need to add ampersand & on the end of the lines. This put them in background and execute some commands in parallel which lead to odd conditions. For example in code:

sudo ./configure --prefix=/usr/local/ &
sudo make &
sudo make install &

the command make start before end of configure and will not end well in most of the cases. Same for make install it try to install the compiled package before it is compiled from make If you want to put script in background you can group the commands on this way:

sudo nohup yum -y install wget autoconf automake libtool jpeg tiff libpng tiff2png libtiff autoconf aclocal automake libtool libjpeg-devel libpng-devel libpng-devel libtiff-devel zlib-devel gcc gcc-c++ make poppler-utils 

nohup sudo wget https://github.com/DanBloomberg/leptonica/releases/download/1.82.0/leptonica-1.82.0.tar.gz && sudo tar xzvf leptonica-1.82.0.tar.gz &&cd leptonica-1.82.0 && sudo ./configure --prefix=/usr/local/ && sudo make && sudo make install &

nohup sudo wget https://codeload.github.com/tesseract-ocr/tesseract/tar.gz/4.1.1 &&sudo tar -zxvf 4.1.1 && cd tesseract-4.1.1 && sudo ./autogen.sh && sudo cp /home/ec2-user/leptonica-1.82.0/lept.pc /usr/lib64/pkgconfig/. && sudo LIBLEPT_HEADERSDIR=/usr/local/lib ./configure --prefix=/usr/local/ --with-extra-libraries=/usr/local/lib && sudo make && sudo make install &

nohup export LD_LIBRARY_PATH=/usr/local/lib && sudo ldconfig && sudo wget https://github.com/tesseract-ocr/tessdata_best/raw/main/eng.traineddata && sudo mv -v eng.traineddata /usr/local/share/tessdata/eng.traineddata && sudo wget https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs9550/ghostpdl-9.55.0.tar.gz && sudo tar -zxvf ghostpdl-9.55.0.tar.gz && cd ghostpdl-9.55.0 && sudo ./configure --prefix=/usr/local/ && sudo make && sudo make install &

nohup sudo wget https://github.com/qpdf/qpdf/releases/download/release-qpdf-10.1.0/qpdf-10.1.0.tar.gz && sudo tar xzvf qpdf-10.1.0.tar.gz && cd qpdf-10.1.0 && sudo ./configure --prefix=/usr/local/ && sudo make && sudo make install &

Upvotes: 1

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