Reputation: 83
I have code that includes several initial checks of different parameter values. The code is part of a larger project involving several R scripts as well as calls from other environments. If a parameter value does not pass one of the checks, I want to
Otherwise, the remaining code should be run. If there are other errors (not thrown by me), I also need an error handling resulting in a customizable general result code (signalling that there was an error, but that it was not one thrown by me) and a more detailled log.
The result codes are part of the communication with a larger environment and just distinguishes between wrong parameter values (i.e., errors thrown by me) and other internal problems (that might occur later in the script).
I would like to use tryCatchLog because it allows me to log a detailed traceback including the script name (I am sourcing my own code) and the line number. I have not figured out, however, how to generate my own error code (currently I am doing this via the base function stop()) and pass this along using tryCatchLog (while also writing a log).
Example
In the following example, my parameter_check() throws an error via stop() with my result code "400". Using tryCatchLog I can catch the error and get a detailed error message including a traceback. However, I want to seperate my own error code (just "400"), which should be printed to the console, and a more detailed error message, which should go to a log file.
library(tryCatchLog)
parameter_check <- function(error) {
if (error){
stop("400")
print("This line should not appear")
}
}
print("Beginning")
tryCatchLog(parameter_check(error = TRUE),
error = function(e) {print(e)}
)
print("End")
Currently, the result is:
[1] "Beginn" ERROR [2021-12-08 11:43:38] 400 Compact call stack: 1 tryCatchLog(parameter_check(0), error = function(e) { 2 #3: stop("400") Full call stack: 1 tryCatchLog(parameter_check(0), error = function(e) { print(e) 2 tryCatch(withCallingHandlers(expr, condition =
cond.handler), ..., finall 3 tryCatchList(expr, classes, parentenv, handlers) 4 tryCatchOne(expr, names, parentenv, handlers[[1]]) 5 doTryCatch(return(expr), name, parentenv, handler) 6 withCallingHandlers(expr, condition = cond.handler) 7 parameter_check(0) 8 #3: stop("400") 9 .handleSimpleError(function (c) { if (inherits(c, "condition") <simpleError in parameter_check(0): 400>
I would like to get my own result code ("400") so that I can print it to the console while logging the complete error message in a file. Is there a way of doing it without writing code parsing the error message, etc.?
Solution with tryCatch
Based on the hint by R Yoda and this answers this is a solution with tryCatch and calling handlers.
### Parameters
log_file_location <- "./logs/log.txt"
### Defining functions
parameter_check_1 <- function(error) {
if (error){
stop("400")
}
}
parameter_check_2 <- function(error) {
if (error){
stop("400")
}
}
write_to_log <- function(file_location, message) {
if (file.exists(file_location))
{write(message, file_location, append = TRUE)}
else
{write(message, file_location, append = FALSE)}
}
parameter_check <- function(){
print("Beginning of parameter check")
print("First check")
parameter_check_1(error = TRUE)
print("Second check")
parameter_check_2(error = FALSE)
print("End of parameter check")
}
main<- function() {
print("Beginning of main function")
log(-1) # throws warning
log("error") # throws error
print("End of main function")
}
### Setting parameters
result_code_no_error <- "200"
result_code_bad_request <- "400"
result_code_internal_error <- "500"
# initial value for result_code
result_code <- result_code_no_error
print("Beginning of program")
### Execute parameter check with tryCatch and calling handlers
# Error in parameter checking functions should result in result_code_bad_request
tryCatch(withCallingHandlers(parameter_check(),
error = function(condition){},
warning = function(condition){
write_to_log(log_file_location, condition$message)
invokeRestart("muffleWarning")
}
),
error = function(condition) {
write_to_log(log_file_location, condition$message)
result_code <<- result_code_bad_request
}
)
### Execute main section with tryCatch and calling handlers
# Error in main section should result in result_code_internal_error
# main section should only be excecuted if there is no error (internal or bad request) in the previous section
if (result_code == result_code_no_error) {
tryCatch(withCallingHandlers(main(),
error = function(condition){},
warning = function(condition){
write_to_log(log_file_location, condition$message)
invokeRestart("muffleWarning")
}
),
error = function(condition) {
write_to_log(log_file_location, condition$message)
result_code <<- result_code_internal_error
}
)
}
print("End of program")
print(result_code)
As explained in the vignette for tryCatchLog this has the disadvantage of not logging the precise location of the error. I am not passing on the error message from stop("400"), because all parameter checking functions are in one function call now, but this could be done using condition$message.
Upvotes: 1
Views: 491
Reputation: 8750
The solution is (totally independent of using tryCatchLog
or standard R tryCatch
):
...
error = function(e) {print(e$message)}
..
Background (how R errors work): They create an object of type (error) condition
:
e <- simpleError("400") # same "condition" object as created by stop("400")
str(e)
# List of 2
# $ message: chr "400"
# $ call : NULL
# - attr(*, "class")= chr [1:3] "simpleError" "error" "condition"
print(e$message)
[1] "400"
Upvotes: 2